CX309046
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DBP8_USTMA (ATP-dependent RNA helicase DBP8 OS=Ustilago maydis GN=DBP8 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11 Identity = 29/75 (38.67%), Postives = 50/75 (66.67%), Query Frame = 1 Query: 19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 243 +L+ATD+ RG+DI V +VIN+D+P + Y+HRVGR R G +G AI+F++ D D+++ ++ + + +L Sbjct: 464 VLIATDVGSRGLDIPDVELVINWDLPSAWQDYVHRVGRTARNGKRGFAISFITE-RDIDVIHSIEDKINTKLTQL 537
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DBP8_SCHPO (ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces pombe GN=dbp8 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11 Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1 Query: 16 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 240 +ILVATD+ RG+DI V +VIN+D+P D Y+HRVGR R G G +I+ V+ D D+++ ++ R + E Sbjct: 310 KILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTE-RDVDLVHAIEDRVGTKLSE 383
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DBP5_DEBHA (ATP-dependent RNA helicase DBP5 OS=Debaryomyces hansenii GN=DBP5 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11 Identity = 32/87 (36.78%), Postives = 53/87 (60.92%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARF-EVDIKELP 246 G ++L+ T+++ RGIDI V++V+NYD+P TYLHR+GR GRFG G++I+FV L +++ F +++ +P Sbjct: 390 GRSKVLITTNVLARGIDIASVSMVVNYDLPVDQKGAPDPSTYLHRIGRTGRFGRVGVSISFVHDQKSYQDLMAIRSYFGNIEMTRVP 476
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11 Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 177 G++ IL+ATD+ RG+DI V++VINYD+P + +Y+HRVGR R G G ++ VS Sbjct: 352 GSRNILIATDVASRGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSVALVS 408
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: ROK1_SCHPO (ATP-dependent RNA helicase rok1 OS=Schizosaccharomyces pombe GN=rok1 PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11 Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1 Query: 19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 171 +L+ATDL+ RGID V +VIN+D P S +Y+HR+GR GR G G A+TF Sbjct: 341 VLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTF 391
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11 Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 246 GN ILVATD+ RG+D+ V++VI+Y++P++ +T++HR GR GR G KG AI + + + ++ ELP Sbjct: 409 GNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAI-LIHGQDQTRAVKMIEKEVGSRFNELP 487
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH45_ARATH (DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana GN=RH45 PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11 Identity = 28/79 (35.44%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255 +L+AT + RG+D++ + +V+N+D P+ + Y+HRVGR GR G KG A+TF+S D+ + E+ + +P+ + Sbjct: 667 LLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISE-DDAKYAPDLVKALELSEQPVPDDV 744
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH44_ARATH (Putative DEAD-box ATP-dependent RNA helicase 44 OS=Arabidopsis thaliana GN=RH44 PE=5 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11 Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1 Query: 19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDI 198 +LV TD++GRG+DI + VINYDMP++ D Y HR+GR GR G G+A TF+ + D D+ Sbjct: 525 VLVTTDVLGRGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFL-TLEDKDV 583
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH41_ORYSJ (DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sativa subsp. japonica GN=Os02g0201900 PE=2 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11 Identity = 32/88 (36.36%), Postives = 54/88 (61.36%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 270 G ++V T ++GRG+D+ +V VI +DMP+S D Y+H+VGRA R G +G+AI FV+ D ++ ++ + +P ++ S Y Sbjct: 433 GEVSVVVCTGVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFVNE-EDRNLFRELVQILKTAGAPIPRELANSKY 519
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH37_ARATH (DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11 Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 192 G ILVATD+ RG+DI V V+N+D+P+ D Y+HR+GR GR G GLA F + + S Sbjct: 467 GRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTS 528 The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 482
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Sequences
The
following sequences are available for this feature:
EST sequence >CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bpback to top |