CX309046

Overview
NameCX309046
Unique NameCX309046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DBP8_USTMA (ATP-dependent RNA helicase DBP8 OS=Ustilago maydis GN=DBP8 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 29/75 (38.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 243
            +L+ATD+  RG+DI  V +VIN+D+P +   Y+HRVGR  R G +G AI+F++   D D+++ ++ +    + +L
Sbjct:  464 VLIATDVGSRGLDIPDVELVINWDLPSAWQDYVHRVGRTARNGKRGFAISFITE-RDIDVIHSIEDKINTKLTQL 537          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DBP8_SCHPO (ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces pombe GN=dbp8 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   16 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 240
            +ILVATD+  RG+DI  V +VIN+D+P   D Y+HRVGR  R G  G +I+ V+   D D+++ ++ R    + E
Sbjct:  310 KILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTE-RDVDLVHAIEDRVGTKLSE 383          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DBP5_DEBHA (ATP-dependent RNA helicase DBP5 OS=Debaryomyces hansenii GN=DBP5 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 32/87 (36.78%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARF-EVDIKELP 246
            G  ++L+ T+++ RGIDI  V++V+NYD+P          TYLHR+GR GRFG  G++I+FV        L  +++ F  +++  +P
Sbjct:  390 GRSKVLITTNVLARGIDIASVSMVVNYDLPVDQKGAPDPSTYLHRIGRTGRFGRVGVSISFVHDQKSYQDLMAIRSYFGNIEMTRVP 476          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 177
            G++ IL+ATD+  RG+DI  V++VINYD+P  + +Y+HRVGR  R G  G ++  VS
Sbjct:  352 GSRNILIATDVASRGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSVALVS 408          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: ROK1_SCHPO (ATP-dependent RNA helicase rok1 OS=Schizosaccharomyces pombe GN=rok1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 171
            +L+ATDL+ RGID   V +VIN+D P S  +Y+HR+GR GR G  G A+TF
Sbjct:  341 VLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTF 391          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 246
            GN  ILVATD+  RG+D+  V++VI+Y++P++ +T++HR GR GR G KG AI  +     +  +  ++        ELP
Sbjct:  409 GNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAI-LIHGQDQTRAVKMIEKEVGSRFNELP 487          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH45_ARATH (DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana GN=RH45 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 28/79 (35.44%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            +L+AT +  RG+D++ + +V+N+D P+  + Y+HRVGR GR G KG A+TF+S   D+     +    E+  + +P+ +
Sbjct:  667 LLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISE-DDAKYAPDLVKALELSEQPVPDDV 744          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH44_ARATH (Putative DEAD-box ATP-dependent RNA helicase 44 OS=Arabidopsis thaliana GN=RH44 PE=5 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDI 198
            +LV TD++GRG+DI  +  VINYDMP++ D Y HR+GR GR G  G+A TF+ +  D D+
Sbjct:  525 VLVTTDVLGRGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFL-TLEDKDV 583          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH41_ORYSJ (DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sativa subsp. japonica GN=Os02g0201900 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 32/88 (36.36%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 270
            G   ++V T ++GRG+D+ +V  VI +DMP+S D Y+H+VGRA R G +G+AI FV+   D ++  ++    +     +P ++  S Y
Sbjct:  433 GEVSVVVCTGVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFVNE-EDRNLFRELVQILKTAGAPIPRELANSKY 519          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH37_ARATH (DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 192
            G   ILVATD+  RG+DI  V  V+N+D+P+  D Y+HR+GR GR G  GLA  F +  + S
Sbjct:  467 GRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTS 528          
The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
DBP8_USTMA6.496e-1138.67ATP-dependent RNA helicase DBP8 OS=Ustilago maydis... [more]
DBP8_SCHPO6.496e-1142.67ATP-dependent RNA helicase dbp8 OS=Schizosaccharom... [more]
DBP5_DEBHA6.496e-1136.78ATP-dependent RNA helicase DBP5 OS=Debaryomyces ha... [more]
RRP3_YARLI8.485e-1149.12ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipol... [more]
ROK1_SCHPO8.485e-1154.90ATP-dependent RNA helicase rok1 OS=Schizosaccharom... [more]
RH9_ARATH8.485e-1138.75DEAD-box ATP-dependent RNA helicase 9 OS=Arabidops... [more]
RH45_ARATH8.485e-1135.44DEAD-box ATP-dependent RNA helicase 45 OS=Arabidop... [more]
RH44_ARATH8.485e-1151.67Putative DEAD-box ATP-dependent RNA helicase 44 OS... [more]
RH41_ORYSJ8.485e-1136.36DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sa... [more]
RH37_ARATH8.485e-1148.39DEAD-box ATP-dependent RNA helicase 37 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC21007G04Rv AbsLeaSub1 Citrus clementina cDNA clone C21007G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bp
GCGGGGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGG
AATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGCCAGATT
CTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTTGGCACC
AAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTCCGATATTCT
CAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTCCTGAGC
AGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTTCTCTGA
TGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCCCTTTAT
GTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTTGCCTTG
GAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGCCTTTTC
TTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCT
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