CX309046

Overview
NameCX309046
Unique NameCX309046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: PRP5_NEOFI (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp5 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 252
            IL+AT +  RG+D++++ +V+NYD P+  + Y+HR GR GR G  G A+TF         L + Q R+ VDI +   Q
Sbjct:  862 ILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF---------LTEEQERYSVDIAKALRQ 930          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: PRP5_ASPCL (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus clavatus GN=prp5 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 252
            +L+AT +  RG+D++++ +V+NYD P+  + Y+HR GR GR G  G A+TF         L + Q R+ VDI +  +Q
Sbjct:  862 VLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF---------LTEEQERYSVDIAKALKQ 930          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: PRP28_YEAST (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Saccharomyces cerevisiae GN=PRP28 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 25/65 (38.46%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   16 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQV 210
            +I++AT++  RG+DI  V++V+N+ +    D Y+HR+GR GR   +G A++FVS+A D  ++ ++
Sbjct:  489 QIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVSFVSAAEDESLIREL 553          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   13 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 258
            + IL+ATD+  RG+DI  V++V+N+D+P  +  Y+HRVGR  R G  G AITFV+   D ++  +++      +   P Q D
Sbjct:  314 RSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ-YDVELFQRIEHLIGKKLPGFPTQDD 394          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   13 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 258
            + IL+ATD+  RG+DI  V++V+N+D+P  +  Y+HRVGR  R G  G AITFV+   D ++  +++      +   P Q D
Sbjct:  316 RSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ-YDVELFQRIEHLIGKKLPVFPTQDD 396          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DDX17_MOUSE (Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 252
            G   IL+ATD+  RG+D+E V  VINYD P+S++ Y+HR+GR  R   KG A TF +        N  QAR  + + E   Q
Sbjct:  388 GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPG------NLKQARELIKVLEEANQ 463          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DDX17_HUMAN (Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 252
            G   IL+ATD+  RG+D+E V  VINYD P+S++ Y+HR+GR  R   KG A TF +        N  QAR  + + E   Q
Sbjct:  388 GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPG------NLKQARELIKVLEEANQ 463          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DBP8_LODEL (ATP-dependent RNA helicase DBP8 OS=Lodderomyces elongisporus GN=DBP8 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 258
            G  RIL+ATD+  RG+DI  V +V+N+D+P   D ++HRVGR  R G KG AI+ +    D + +  ++ R    + EL E +D
Sbjct:  305 GAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAGRKGDAISIIGE-KDIERIESIEERINKKM-ELLEGVD 386          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DBP8_ASPNC (ATP-dependent RNA helicase dbp8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   16 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 252
            R+LVATD+  RG+DI  V +V+N+D+P + D Y+HRVGR  R G KG ++T V    D  ++  ++ R    ++E  E+
Sbjct:  399 RLLVATDVASRGLDIPSVELVVNFDVPRNPDDYVHRVGRTARAGRKGESVTLVGQ-RDVSLVLAIEERVGRQMEEWSEE 476          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DBP2_LODEL (ATP-dependent RNA helicase DBP2 OS=Lodderomyces elongisporus GN=DBP2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 171
            G+  I+VATD+  RGID++ +  V+NYDMP + + Y+HR+GR GR G  G AI+F
Sbjct:  412 GSHSIMVATDVAARGIDVKGITHVVNYDMPGNIEDYVHRIGRTGRGGATGTAISF 466          
The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
PRP5_NEOFI8.485e-1139.74Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP5_ASPCL8.485e-1138.46Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP28_YEAST8.485e-1138.46Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DDX47_HUMAN8.485e-1139.02Probable ATP-dependent RNA helicase DDX47 OS=Homo ... [more]
DDX47_BOVIN8.485e-1139.02Probable ATP-dependent RNA helicase DDX47 OS=Bos t... [more]
DDX17_MOUSE8.485e-1142.68Probable ATP-dependent RNA helicase DDX17 OS=Mus m... [more]
DDX17_HUMAN8.485e-1142.68Probable ATP-dependent RNA helicase DDX17 OS=Homo ... [more]
DBP8_LODEL8.485e-1140.48ATP-dependent RNA helicase DBP8 OS=Lodderomyces el... [more]
DBP8_ASPNC8.485e-1140.51ATP-dependent RNA helicase dbp8 OS=Aspergillus nig... [more]
DBP2_LODEL8.485e-1150.91ATP-dependent RNA helicase DBP2 OS=Lodderomyces el... [more]

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Properties
Property NameValue
Genbank descriptionC21007G04Rv AbsLeaSub1 Citrus clementina cDNA clone C21007G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bp
GCGGGGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGG
AATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGCCAGATT
CTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTTGGCACC
AAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTCCGATATTCT
CAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTCCTGAGC
AGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTTCTCTGA
TGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCCCTTTAT
GTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTTGCCTTG
GAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGCCTTTTC
TTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCT
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