CX309058

Overview
NameCX309058
Unique NameCX309058
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length449
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309058 vs. ExPASy Swiss-Prot
Match: ZIP9_ARATH (Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.002e-15
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = -3
Query:   70 PVXXXXXXXISSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 315
            P+       I+S Y+  S  AL+ EG+ ++ +AGIL+YM+LVDL+AADF++ KM  + R+Q  +   L LGAG MS LA WA
Sbjct:  263 PIGVAVGTAIASSYNSYSVAALVAEGVLDSLSAGILVYMALVDLIAADFLSKKMSVDFRVQVVSYCFLFLGAGMMSALAIWA 344          

HSP 2 Score: 26.1794 bits (56), Expect = 8.002e-15
Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = -1
Query:  306 AKFKSRGVAILALFFSLTTQLG 371
            A+   RG A++A FF++TT +G
Sbjct:  244 ARLTPRGSAMMAFFFAITTPIG 265          
BLAST of CX309058 vs. ExPASy Swiss-Prot
Match: IRT2_ARATH (Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.135e-14
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = -3
Query:   70 SSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 285
            SS+Y +NSPTALI  G+ NA +AG+LIYM+LVDLLA +FM   +Q + +LQ     + LLG   MS++A WA
Sbjct:  279 SSIYRDNSPTALITIGLLNACSAGMLIYMALVDLLATEFMGSMLQGSIKLQIKCFTAALLGCAVMSVVAVWA 350          
BLAST of CX309058 vs. ExPASy Swiss-Prot
Match: ZIP6_ARATH (Zinc transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ZIP6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 36/74 (48.65%), Postives = 52/74 (70.27%), Query Frame = -3
Query:   70 YDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKM-----QTNKRLQFGANVSLLLGAGCMSLLAKWA 276
            YD+ +P ALI+EG+  + ++GILIYM+LVDL+A DF + KM     ++  RL+    V+L+LG+  MSLLA WA
Sbjct:  268 YDDQNPNALIMEGLLGSFSSGILIYMALVDLIALDFFHNKMLTTCGESGSRLKKLCFVALVLGSASMSLLALWA 341          
The following BLAST results are available for this feature:
BLAST of CX309058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ZIP9_ARATH8.002e-1546.34Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9... [more]
IRT2_ARATH5.135e-1452.78Fe(2+) transport protein 2 OS=Arabidopsis thaliana... [more]
ZIP6_ARATH1.398e-1148.65Zinc transporter 6, chloroplastic OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC21007H09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309058 ID=CX309058; Name=CX309058; organism=Citrus clementina; type=EST; length=449bp
AAAAACTGCCGCAAATTAATTAAACTATTGGATGAAGAAAAATTGTAGAC
AAAATCTGAATGAATTTTAAGCCCATTTGGCTAACAAAGACATGCAACCA
GCGCCTAAAAGAAGAGAAACATTTGCTCCAAACTGAAGCCTTTTATTGGT
TTGCATCTTTGGATTCATAAAATCTGCAGCAAGAAGATCCACCAAGGACA
TGTATATTAGGATTCCGGCTGCTGCTGCATTGAATATTCCTTCAACAATA
AGAGCGGTGGGACTATTTTCGTCATAAACACTTGATATTCCAATGCCTAT
TGCTATCCCAACTGGGTCGTCAAAGAGAAGAACAAGGCCAATATTGCAAC
TCCTCGAGACTTGAATTTTGCCTATAAAAACGAACACGTTAAAACAAAAT
TGTTAACATCAATTACTACTGAAATTTGGAGCCAGATTGTCCACTTGAT
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