CX309065

Overview
NameCX309065
Unique NameCX309065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14247 contig Ccv1_Contig14247:11..388. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.284e-15
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 2
Query:  206 IGNMGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            +GN   +F +LF  LFG KE RIL++GLD AGKTTILY+L++GEVV+TIPTIGFNVE
Sbjct:    1 MGNTLSIFGKLFDGLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE 57          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF1_DICDI (ADP-ribosylation factor 1 OS=Dictyostelium discoideum GN=arfA PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.284e-15
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+ F +LFS  FG K+ RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLAFGKLFSRFFGKKDMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF_AJECA (ADP-ribosylation factor OS=Ajellomyces capsulata GN=ARF PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15
Identity = 36/54 (66.67%), Postives = 48/54 (88.89%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+ F++LF  ++G KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGMAFSKLFDRIWGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF4_XENLA (ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf4 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  + LFS LFG K+ RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF4_RAT (ADP-ribosylation factor 4 OS=Rattus norvegicus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  + LFS LFG K+ RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  + LFS LFG K+ RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF4_MOUSE (ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  + LFS LFG K+ RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF4_HUMAN (ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  + LFS LFG K+ RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  + LFS LFG K+ RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  ++LFS LF  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLTISKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
The following BLAST results are available for this feature:
BLAST of CX309065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
ARF_NEUCR2.284e-1568.42ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]
ARF1_DICDI2.284e-1568.52ADP-ribosylation factor 1 OS=Dictyostelium discoid... [more]
ARF_AJECA3.896e-1566.67ADP-ribosylation factor OS=Ajellomyces capsulata G... [more]
ARF4_XENLA3.896e-1568.52ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf... [more]
ARF4_RAT3.896e-1568.52ADP-ribosylation factor 4 OS=Rattus norvegicus GN=... [more]
ARF4_PONAB3.896e-1568.52ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ... [more]
ARF4_MOUSE3.896e-1568.52ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 ... [more]
ARF4_HUMAN3.896e-1568.52ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 ... [more]
ARF4_BOVIN3.896e-1568.52ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
ARF1_SOLTU3.896e-1568.52ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21008A11Rv AbsLeaSub1 Citrus clementina cDNA clone C21008A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309065 ID=CX309065; Name=CX309065; organism=Citrus clementina; type=EST; length=378bp
GCGGGGAAAACAACAATTAAACAAACCCCCCAAAACTTTCATCTTTTTTA
TTTTTTTATAACTCAAAAGTCTCAACAAATCTCGCAAGCAGACCCTCTTC
CTTTTTTTCCAGGGAGGAACAGGGGACTCTGCTTTGCAGATCCAATACAT
AATTCAATCACAAAAAAAGCTTCAATTTTTCCGATCGGATCACTAAGAAT
ACAAAATCGGAAACATGGGTATTATGTTTACGCGATTGTTCTCTTCGCTC
TTTGGCAACAAAGAGGCTAGGATTCTAGTTCTTGGCCTTGACAATGCTGG
CAAAACTACGATTCTCTATCGGCTTCAAATGGGTGAAGTTGTGTCAACTA
TTCCAACTATTGGATTTAATGTGGAGAC
back to top