CX309065

Overview
NameCX309065
Unique NameCX309065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14247 contig Ccv1_Contig14247:11..388. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+ FT+L   LF  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG +F  LF  LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGNVFGSLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 79.7221 bits (195), Expect = 5.089e-15
Identity = 36/54 (66.67%), Postives = 48/54 (88.89%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  ++LF+SL G +E RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLTISKLFASLLGRREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 8.680e-15
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG +F+ +F  L+G NKE RIL+LGLD AGKTTILYRLQ+GEVV+T PTIGFNVE
Sbjct:    1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE 55          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.680e-15
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  ++L + LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLSVSKLLNGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF5_RAT (ADP-ribosylation factor 5 OS=Rattus norvegicus GN=Arf5 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.680e-15
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  + LFS +FG K+ RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF5_MOUSE (ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.680e-15
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  + LFS +FG K+ RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.680e-15
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  + LFS +FG K+ RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.680e-15
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG +F  LF  LFG +E RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGNVFGSLFKGLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.481e-14
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG + T L   LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
The following BLAST results are available for this feature:
BLAST of CX309065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
ARF1_SALBA3.896e-1568.52ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF12_CAEBR3.896e-1570.37ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF_CANAL5.089e-1566.67ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]
ARL1_YEAST8.680e-1572.73ADP-ribosylation factor-like protein 1 OS=Saccharo... [more]
ARF_CRYNE8.680e-1566.67ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARF5_RAT8.680e-1566.67ADP-ribosylation factor 5 OS=Rattus norvegicus GN=... [more]
ARF5_MOUSE8.680e-1566.67ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 ... [more]
ARF5_HUMAN8.680e-1566.67ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
ARF12_CAEEL8.680e-1568.52ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF_DUGJA1.481e-1468.52ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC21008A11Rv AbsLeaSub1 Citrus clementina cDNA clone C21008A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309065 ID=CX309065; Name=CX309065; organism=Citrus clementina; type=EST; length=378bp
GCGGGGAAAACAACAATTAAACAAACCCCCCAAAACTTTCATCTTTTTTA
TTTTTTTATAACTCAAAAGTCTCAACAAATCTCGCAAGCAGACCCTCTTC
CTTTTTTTCCAGGGAGGAACAGGGGACTCTGCTTTGCAGATCCAATACAT
AATTCAATCACAAAAAAAGCTTCAATTTTTCCGATCGGATCACTAAGAAT
ACAAAATCGGAAACATGGGTATTATGTTTACGCGATTGTTCTCTTCGCTC
TTTGGCAACAAAGAGGCTAGGATTCTAGTTCTTGGCCTTGACAATGCTGG
CAAAACTACGATTCTCTATCGGCTTCAAATGGGTGAAGTTGTGTCAACTA
TTCCAACTATTGGATTTAATGTGGAGAC
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