CX309065

Overview
NameCX309065
Unique NameCX309065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14247 contig Ccv1_Contig14247:11..388. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.308e-14
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  + L + LFG K+ RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLTISSLLTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARL1_DROME (ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=1 SV=5)

HSP 1 Score: 75.8702 bits (185), Expect = 7.348e-14
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 2
Query:  239 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            F  L G++E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVE
Sbjct:    8 FRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE 53          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.637e-13
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG   +++F  LF  KE RIL++GLD AGKTTILY+L +GEVV+T+PTIGFNVE
Sbjct:    1 MGQGASKIFGKLFSKKEVRILMVGLDAAGKTTILYKLMLGEVVTTVPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.637e-13
Identity = 34/48 (70.83%), Postives = 43/48 (89.58%), Query Frame = 2
Query:  233 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            +L S +FGNKE RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVE
Sbjct:    3 KLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE 50          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.792e-13
Identity = 33/48 (68.75%), Postives = 43/48 (89.58%), Query Frame = 2
Query:  233 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            ++FS +FGNKE RIL+ GLD AGKTTILY+L++G+ V+TIPT+GFNVE
Sbjct:    3 KMFSKIFGNKEMRILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE 50          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13
Identity = 33/48 (68.75%), Postives = 43/48 (89.58%), Query Frame = 2
Query:  233 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            ++ S +FGNKE RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVE
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE 50          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13
Identity = 33/48 (68.75%), Postives = 43/48 (89.58%), Query Frame = 2
Query:  233 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            ++ S +FGNKE RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVE
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE 50          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13
Identity = 33/48 (68.75%), Postives = 43/48 (89.58%), Query Frame = 2
Query:  233 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            ++ S +FGNKE RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVE
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE 50          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13
Identity = 33/48 (68.75%), Postives = 43/48 (89.58%), Query Frame = 2
Query:  233 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            ++ S +FGNKE RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVE
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE 50          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13
Identity = 33/48 (68.75%), Postives = 43/48 (89.58%), Query Frame = 2
Query:  233 RLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            ++ S +FGNKE RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVE
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE 50          
The following BLAST results are available for this feature:
BLAST of CX309065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
ARF2_DROME4.308e-1464.81ADP-ribosylation factor 2 OS=Drosophila melanogast... [more]
ARL1_DROME7.348e-1478.26ADP-ribosylation factor-like protein 1 OS=Drosophi... [more]
ARF_GIALA1.637e-1364.81ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF3_DROME1.637e-1370.83ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF6_XENLA2.792e-1368.75ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF6_RAT3.647e-1368.75ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG3.647e-1368.75ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE3.647e-1368.75ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN3.647e-1368.75ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_CHICK3.647e-1368.75ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]

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Properties
Property NameValue
Genbank descriptionC21008A11Rv AbsLeaSub1 Citrus clementina cDNA clone C21008A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309065 ID=CX309065; Name=CX309065; organism=Citrus clementina; type=EST; length=378bp
GCGGGGAAAACAACAATTAAACAAACCCCCCAAAACTTTCATCTTTTTTA
TTTTTTTATAACTCAAAAGTCTCAACAAATCTCGCAAGCAGACCCTCTTC
CTTTTTTTCCAGGGAGGAACAGGGGACTCTGCTTTGCAGATCCAATACAT
AATTCAATCACAAAAAAAGCTTCAATTTTTCCGATCGGATCACTAAGAAT
ACAAAATCGGAAACATGGGTATTATGTTTACGCGATTGTTCTCTTCGCTC
TTTGGCAACAAAGAGGCTAGGATTCTAGTTCTTGGCCTTGACAATGCTGG
CAAAACTACGATTCTCTATCGGCTTCAAATGGGTGAAGTTGTGTCAACTA
TTCCAACTATTGGATTTAATGTGGAGAC
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