CX309065

Overview
NameCX309065
Unique NameCX309065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14247 contig Ccv1_Contig14247:11..388. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 2
Query:  212 NMGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            ++   F+ +FS   G KE RIL++GLD AGK+T+LY+L++G+VVSTIPTIGFNVE
Sbjct:    8 SLASFFSNIFSLFEGKKETRILMIGLDGAGKSTLLYKLKLGDVVSTIPTIGFNVE 62          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 31/55 (56.36%), Postives = 45/55 (81.82%), Query Frame = 2
Query:  212 NMGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            N+   F+ +FS   G K+ RIL++GLD AGK+T+LY+L++G++VST+PTIGFNVE
Sbjct:    8 NLASFFSNIFSLFEGKKQTRILMIGLDGAGKSTLLYKLKLGDIVSTVPTIGFNVE 62          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+ F+++ S +F N E R L+LGLD AGKTTILY+L++ E V+TIPTIGFNVE
Sbjct:    1 MGLFFSKISSFMFPNIECRTLMLGLDGAGKTTILYKLKLNETVNTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARL17_HUMAN (ADP-ribosylation factor-like protein 17 OS=Homo sapiens GN=ARL17 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG +F +LF SL G K+ RIL+L LD AGKTTILY+L++GE V  +PT+GF VE
Sbjct:    1 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:  227 FTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            F++ FS LF NKE RIL+LGLD AGKTTILY+L++ + V TIPT+GFNVE
Sbjct:    9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVE 58          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARL5A_RAT (ADP-ribosylation factor-like protein 5A OS=Rattus norvegicus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.983e-12
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MGI+FTR++  LF ++E +++++GLDNAGKTTILY+  M EVV T PTIG NVE
Sbjct:    1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE 53          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARL5A_MOUSE (ADP-ribosylation factor-like protein 5A OS=Mus musculus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.983e-12
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MGI+FTR++  LF ++E +++++GLDNAGKTTILY+  M EVV T PTIG NVE
Sbjct:    1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE 53          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARL5A_HUMAN (ADP-ribosylation factor-like protein 5A OS=Homo sapiens GN=ARL5A PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.983e-12
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MGI+FTR++  LF ++E +++++GLDNAGKTTILY+  M EVV T PTIG NVE
Sbjct:    1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE 53          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARL5A_BOVIN (ADP-ribosylation factor-like protein 5A OS=Bos taurus GN=ARL5A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.983e-12
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MGI+FTR++  LF ++E +++++GLDNAGKTTILY+  M EVV T PTIG NVE
Sbjct:    1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE 53          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11
Identity = 30/55 (54.55%), Postives = 44/55 (80.00%), Query Frame = 2
Query:  212 NMGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            ++   F+ +FS   G K+ RIL++GLD AGK+T+L++L++G+VV TIPTIGFNVE
Sbjct:    8 SLASFFSNIFSLFEGKKDTRILMIGLDGAGKSTLLFKLKLGDVVLTIPTIGFNVE 62          
The following BLAST results are available for this feature:
BLAST of CX309065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
ARFJ_DICDI4.763e-1360.00ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARFH_DICDI4.763e-1356.36ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARF11_CAEEL4.763e-1362.96ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]
ARL17_HUMAN1.386e-1261.11ADP-ribosylation factor-like protein 17 OS=Homo sa... [more]
ARF2_SCHPO1.386e-1268.00Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARL5A_RAT8.983e-1261.11ADP-ribosylation factor-like protein 5A OS=Rattus ... [more]
ARL5A_MOUSE8.983e-1261.11ADP-ribosylation factor-like protein 5A OS=Mus mus... [more]
ARL5A_HUMAN8.983e-1261.11ADP-ribosylation factor-like protein 5A OS=Homo sa... [more]
ARL5A_BOVIN8.983e-1261.11ADP-ribosylation factor-like protein 5A OS=Bos tau... [more]
ARFK_DICDI1.532e-1154.55ADP-ribosylation factor K OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC21008A11Rv AbsLeaSub1 Citrus clementina cDNA clone C21008A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309065 ID=CX309065; Name=CX309065; organism=Citrus clementina; type=EST; length=378bp
GCGGGGAAAACAACAATTAAACAAACCCCCCAAAACTTTCATCTTTTTTA
TTTTTTTATAACTCAAAAGTCTCAACAAATCTCGCAAGCAGACCCTCTTC
CTTTTTTTCCAGGGAGGAACAGGGGACTCTGCTTTGCAGATCCAATACAT
AATTCAATCACAAAAAAAGCTTCAATTTTTCCGATCGGATCACTAAGAAT
ACAAAATCGGAAACATGGGTATTATGTTTACGCGATTGTTCTCTTCGCTC
TTTGGCAACAAAGAGGCTAGGATTCTAGTTCTTGGCCTTGACAATGCTGG
CAAAACTACGATTCTCTATCGGCTTCAAATGGGTGAAGTTGTGTCAACTA
TTCCAACTATTGGATTTAATGTGGAGAC
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