CX309079
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 3.721e-54 Identity = 109/206 (52.91%), Postives = 140/206 (67.96%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL-XXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616 ANF VYT LL P +RIM LD P GGHLSHGY T KK+SA SIFFE+ PY+++ TGYIDY+++E+ A +RPK+++ G S+Y R +DY R R++ +K AV++ DMAHISGL+AA + SPFDY D+VT+TTHKSL K+ KQG + YDFE++IN AV P LQGGPHN+ I LA+ALKQ T Sbjct: 152 ANFHVYTALLKPHERIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV-------LYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATT 349
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2) HSP 1 Score: 210.69 bits (535), Expect = 4.859e-54 Identity = 115/210 (54.76%), Postives = 141/210 (67.14%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKK---PRK-QGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN A YT LL P DRIMGLD P GGHL+HGY + K+VSA SIFFES PYK+NPQTG IDYE+L A +RP+++I G S+Y R DY R R++ D+ A L+ DMAHISGL+AAK + SPF + D+VT+TTHK+L + P+ Q IP Y FE+RINFAV PSLQGGPHN+ IAA+A+ALKQ TP Sbjct: 146 ANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDV-KRVSATSIFFESMPYKLNPQTGLIDYEQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADVVTTTTHKTLRGARSGLIFYRKGVRTVDPKTGQEIP---------YTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTP 345
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 1.414e-53 Identity = 112/205 (54.63%), Postives = 137/205 (66.83%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616 ANFAVYT L+ P RIMGLD P GGHL+HG+ T G KK+SA SIFFES PYKVNP TGYI+Y++LEE A + PK++I G S Y R DY R R+IAD+ GA LM DMAHISGL+AA + SPF++C +VT+TTHK+L + Q + G Y+ E IN AV P LQGGPHN+ IA +A+ALKQ T Sbjct: 123 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMT-GKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLDYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFY----RKGVQSVDPKTGKEIL-YNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMT 321
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3) HSP 1 Score: 208.379 bits (529), Expect = 2.412e-53 Identity = 113/206 (54.85%), Postives = 140/206 (67.96%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AVYT LL P DRIMGLD P GGHL+HGY + K++SA SIFFES PYK+NP+TG IDY +L A +RP+++I G S+Y R DY R R++ D+ A L+ DMAHISGL+AAK + SPF + DIVT+TTHK+L +K K P + Y FE+RINFAV PSLQGGPHN+ IAA+A+ALKQ TP Sbjct: 146 ANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDV-KRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTL---RGARSGLIFYRKGVKAVDPKTGRE--IPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTP 345
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 3.150e-53 Identity = 111/206 (53.88%), Postives = 139/206 (67.48%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN A YT LL P DRIMGLD P GGHL+HGY + K++SA SIFFES PYK+NPQTG IDY++L A ++P+++I G S+Y R DY R R++ D+ A L+ DMAHISGL+AAK + SPF + DIVT+TTHK+L + Q + G Y FE+RINFAV PSLQGGPHN+ IAA+A+ALKQ TP Sbjct: 146 ANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDV-KRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFY----RKGVQAVDPKTGREIP-YTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTP 345
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2) HSP 1 Score: 207.608 bits (527), Expect = 4.114e-53 Identity = 112/208 (53.85%), Postives = 136/208 (65.38%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKK--PRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 ANFAVYT L+ P RIMGLD P GGHL+HG+ T KK+SA SIFFES YKVNP TGYIDY++LEE A + PK++I G S Y R DYGR R+IAD+ GA LM DMAHISGL+ A + SPF++C +VT+TTHK+L + K G + Y+ E IN AV P LQGGPHN+ IA +A+ALKQ TP Sbjct: 123 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDK-KKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEI-------LYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTP 322
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3) HSP 1 Score: 206.838 bits (525), Expect = 7.017e-53 Identity = 110/206 (53.40%), Postives = 138/206 (66.99%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 ANFAVYT L+ P RIMGLD P GGHL+HG+ T KK+SA SIFFES PYKVNP TGYI+Y++LEE A + P+++I G S Y R DY R R+IAD GA LM DMAHISGL+AA + SPF++C +V++TTHK+L +K + P + + Y+ E IN AV P LQGGPHN+ IA +A+ALKQ TP Sbjct: 123 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDK-KKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTL---RGCRAGMIFYRKGVRSVDPKTGKE--TRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTP 322
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 7.017e-53 Identity = 112/208 (53.85%), Postives = 137/208 (65.87%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSN--YDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN VY L+ P +R+MGL P GGHLSHGY T +K+SA S +FESFPY+V+P+TG IDY+ LE+ A+ YRPKIL+ G S+Y R DY R R+IADK GA LM DMAHISGL+AA + SPF+Y DIVT+TTHKSL ++G+ H YD E INF+V P QGGPHN+ I+ALA ALKQ TP Sbjct: 114 ANLQVYQALMKPHERLMGLHLPDGGHLSHGYQTET-RKISAVSTYFESFPYRVDPETGIIDYDTLEKNAVLYRPKILVAGTSAYCRLIDYKRMREIADKVGAYLMVDMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFF-------RRGVRSVHPKTGEEVMYDLEGPINFSVFPGHQGGPHNHTISALATALKQATTP 313
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3) HSP 1 Score: 206.453 bits (524), Expect = 9.164e-53 Identity = 109/206 (52.91%), Postives = 138/206 (66.99%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 ANFAVYT L+ P RIMGLD P GGHL+HG+ T KK+SA SIFFES PYKVNP TGYI+Y++LEE A + P+++I G S Y R DY R R+IAD GA LM DMAH+SGL+AA + SPF++C +V++TTHK+L +K + P + + Y+ E IN AV P LQGGPHN+ IA +A+ALKQ TP Sbjct: 123 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDK-KKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHVSGLVAAGVVPSPFEHCHVVSTTTHKTL---RGCRAGMIFYRKGVRSVDPKTGRE--TRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTP 322
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 2.666e-52 Identity = 111/205 (54.15%), Postives = 137/205 (66.83%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616 ANFAVYT L+ P RIMGLD P GGHL+HG+ T KK+SA SIFFES PYKVNP TGYI+Y++LEE A + PK++I G S Y R +Y R R+IAD+ GA LM DMAHISGL+AA + SPF++C +VT+TTHK+L +K K P + Y+ E IN AV P LQGGPHN+ IA +A+ALKQ T Sbjct: 123 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDK-KKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTL---RGCRAGMIFYRKGVKSVDPKTGKE--ILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMT 321 The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bpback to top |