CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_HELAH (Serine hydroxymethyltransferase OS=Helicobacter acinonychis (strain Sheeba) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.527e-34
Identity = 84/206 (40.78%), Postives = 122/206 (59.22%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL P D+I+G+D   GGHL+HG       KVS     ++SF Y V    GYIDY +  + A   +P+I++CG S+YPRE D+ +FR+IAD+ GA+L+ D+AH++GL+ A E A PF +C +V+STTHK+L             + PR  G+ L + +     +   +I+ A+ P  QGGP  + IAA A+  K+   P
Sbjct:   98 ANNAVYHALLKPYDKILGMDLSCGGHLTHG------AKVSLTGKHYQSFSYGVGLD-GYIDYGETLKIAQSVKPQIIVCGFSAYPREIDFKKFREIADEVGALLLGDIAHVAGLVVASEHAHPFPHCHVVSSTTHKTL-------------RGPR-GGLILTNDE-----EIAAKIDKAIFPGTQGGPLMHAIAAKAVGFKENLKP 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CAMJE (Serine hydroxymethyltransferase OS=Campylobacter jejuni GN=glyA PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 9.527e-34
Identity = 84/201 (41.79%), Postives = 117/201 (58.21%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALK 604
            AN  VY  L+ PGD+I+G+D   GGHL+HG       KVS++   +ES  Y V    G IDYEK+ E A   +PK+++CG S+Y R  D+ +FR+IAD+ GA L  D+AHI+GL+ A E  SPF Y  +V+STTHK+L             + PR   I  N      + +  ++IN A+ P +QGGP  + IAA A+  K
Sbjct:   96 ANQGVYAALINPGDKILGMDLSHGGHLTHG------AKVSSSGKMYESCFYGVELD-GRIDYEKVREIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTL-------------RGPRGGIIMTN------DEELAKKINSAIFPGIQGGPLMHVIAAKAVGFK 270          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_SULDN (Serine hydroxymethyltransferase 2 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.527e-34
Identity = 83/206 (40.29%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL  GD+++G+D   GGHL+HG       K S +   + SF Y V    G +DY+K+ E A   +PKI++CG S+Y RE D+ +FR+IAD  GA L  D+AH++GL+AA E  SPF +  +VT+TTHK+L             + PR   I  +      + +  ++IN A+ P +QGGP  + IAA A+A K++  P
Sbjct:  102 ANAAVYAALLKAGDKLLGMDLSHGGHLTHG------SKPSFSGQNYSSFTYGVEAD-GRMDYDKILEIAKAVQPKIIVCGASAYAREIDFKKFREIADAVGAFLFADIAHVAGLVAADEHMSPFPHAHVVTTTTHKTL-------------RGPRGGMIMTD------DEEIAKKINSAIFPGIQGGPLVHVIAAKAVAFKEILDP 281          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_RALEJ (Serine hydroxymethyltransferase 2 OS=Ralstonia eutropha (strain JMP134) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.527e-34
Identity = 82/205 (40.00%), Postives = 119/205 (58.05%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN +V   L  PGD ++G+   +GGHL+HG       K + +  +F +  Y VN ++  IDY+++E  A +++P ++I G S+YPR+ D+ RFR IAD  GA LM DMAHI+G+IAA   ++P DY  +VTSTTHK+L             + PR   +  NH       +  ++IN AV P LQGGP  + IAA A+A  +  T
Sbjct:  105 ANGSVMLALTKPGDTVLGMSLDAGGHLTHG------AKPALSGKWFNAVQYGVNRESMLIDYDQVEALAKEHKPSLIIAGFSAYPRQLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHSNPVDYAHVVTSTTHKTL-------------RGPRGGFVLTNH------EEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEAMT 284          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SYNWW (Serine hydroxymethyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.244e-33
Identity = 85/206 (41.26%), Postives = 116/206 (56.31%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY   L PG  IMG++   GGHL+HG       KV+ +  +F    Y VN  T  IDYE+L E A+  RP++++ G S+YPR  D+ +FR+IAD+ GA+L  DMAHI+GL+AA    SP  Y D V+STTHK+L             + PR        G      ++  +I+ AV P +QGGP  + IAA A+  K+  TP
Sbjct:  101 ANTAVYFAALQPGQTIMGMNLNHGGHLTHG------SKVNISGKYFNIVDYGVNRDTERIDYEELREIALKARPQMIVAGASAYPRILDFKKFREIADEAGALLFVDMAHIAGLVAAGLHPSPVPYADFVSSTTHKTL-------------RGPR-------GGFILCRQEWANKIDKAVFPGIQGGPLMHVIAAKAVCFKEALTP 280          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SACD2 (Serine hydroxymethyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.244e-33
Identity = 82/205 (40.00%), Postives = 118/205 (57.56%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN AVY  L  PGD ++G+    GGHL+HG        VS +   + +  Y +NP TG +DYE++   A +++PK+++ G S+Y +  D+ +FR IAD+ GA LM DMAH++GL+AA    SP    D+ TSTTHK+L             + PR  GI L      +N + E+++N AV P  QGGP  + IAA AI+ K+  T
Sbjct:  101 ANSAVYAALCSPGDTVLGMSLAHGGHLTHG------ASVSFSGKMYNAVQYGINPDTGLVDYEEIANLAREHKPKMIVAGFSAYSQVLDWQKFRDIADEVGAYLMVDMAHVAGLVAAGVYPSPVQIADVTTSTTHKTL-------------RGPR-GGIIL----AKANPEIEKKLNSAVFPGGQGGPLMHVIAAKAISFKEAMT 281          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PSYIN (Serine hydroxymethyltransferase OS=Psychromonas ingrahamii (strain 37) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.244e-33
Identity = 80/206 (38.83%), Postives = 118/206 (57.28%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  L  PGD I+G+    GGHL+HG H      VS +   + +  Y + P+TG +DY ++E  A++++P ++I G S+Y    D+ +FR+IADK GA L  DMAH++GL+AA    +P  + D+VT+TTHK+L                 + G+ L      +N   E+++N AV P  QGGP  + IAA A+A K+ A P
Sbjct:  101 ANAAVYQALCAPGDTILGMSLAHGGHLTHGSH------VSFSGKMYNAVQYGITPETGILDYAEIERLAVEHKPTMIIAGFSAYSGIVDWAKFREIADKVGAYLFVDMAHVAGLVAAGLYPNPVPFADVVTTTTHKTLGGP--------------RGGLIL----AKANEAIEKKLNSAVFPGQQGGPLMHVIAAKAVAFKECAEP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_MARMS (Serine hydroxymethyltransferase OS=Marinomonas sp. (strain MWYL1) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.244e-33
Identity = 85/206 (41.26%), Postives = 117/206 (56.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV   LL PGD IMG+   SGGHL+HG       K      +F +  Y+V+P+T  IDY+ +E +A++ +PK++I GGS+ PR+ D+ RFR+IADK GA L  DMAHI+GL+A     SP  +  +VT+TTHK+L             + PR   I  N      + D  ++IN AV P  QGGP  + IA  A+A  +   P
Sbjct:  105 ANGAVMLALLQPGDTIMGMSLSSGGHLTHGAAPAQSGK------WFNAVQYEVSPETLLIDYDAIEAQALECKPKMIIAGGSAIPRQIDFKRFREIADKVGAYLFVDMAHIAGLVATGVHPSPLPHAHVVTTTTHKTL-------------RGPRGGMILSN------DLDLGKKINSAVFPGYQGGPLMHVIAGKAVAFGEALKP 285          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_MARAV (Serine hydroxymethyltransferase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.244e-33
Identity = 79/202 (39.11%), Postives = 119/202 (58.91%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQ 607
            AN AV+  LL PGD ++G+    GGHL+HG        V+ +   + +  Y +NP+TG IDY+++E  A++++PK++I G S+Y +E D+ RFR IADK GA L  DMAH++GL+AA     P  +  +V +TTHK+L             + PR  G+ L     C + D ++++N AV P  QGGP  + IAA A+  K+
Sbjct:  101 ANSAVFMALLKPGDTVLGMSLAHGGHLTHG------ASVNFSGKIYSAVQYGLNPETGLIDYDEVEALAVEHKPKMIIAGFSAYSQELDFARFRAIADKVGAYLFVDMAHVAGLVAAGVYPDPVPHAHVVATTTHKTL-------------RGPR-GGLIL----ACDDEDLQKKLNSAVFPGGQGGPLMHVIAAKAVCFKE 278          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CHLTE (Serine hydroxymethyltransferase OS=Chlorobium tepidum GN=glyA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.244e-33
Identity = 82/206 (39.81%), Postives = 117/206 (56.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV   +L PGD IMGLD   GGHL+HG       KV+ +  FF++  Y V+ +TG ID  K+EE A   +PK++I G S+Y + +D+  FR++ADK GA+LM D+AH +GL+AA   A+P  +C  VT+TTHK+L              +    G+ +N  +G       E I+  V P +QGGP  + IA  A+A  +   P
Sbjct:   99 ANMAVLFAVLKPGDAIMGLDLSHGGHLTHG------SKVNFSGQFFDAHSYGVDKETGIIDMNKVEEMARRVKPKLIITGASAYSQGFDFKAFREVADKVGALLMADIAHPAGLVAAGLSANPMPHCHFVTTTTHKTLRGPRGGMIMMGKDFE-NPLGLTINTKNGSRVKMMSEVIDAEVMPGIQGGPLMHIIAGKAVAFGEALQP 297          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_HELAH9.527e-3440.78Serine hydroxymethyltransferase OS=Helicobacter ac... [more]
GLYA_CAMJE9.527e-3441.79Serine hydroxymethyltransferase OS=Campylobacter j... [more]
GLYA2_SULDN9.527e-3440.29Serine hydroxymethyltransferase 2 OS=Sulfurimonas ... [more]
GLYA2_RALEJ9.527e-3440.00Serine hydroxymethyltransferase 2 OS=Ralstonia eut... [more]
GLYA_SYNWW1.244e-3341.26Serine hydroxymethyltransferase OS=Syntrophomonas ... [more]
GLYA_SACD21.244e-3340.00Serine hydroxymethyltransferase OS=Saccharophagus ... [more]
GLYA_PSYIN1.244e-3338.83Serine hydroxymethyltransferase OS=Psychromonas in... [more]
GLYA_MARMS1.244e-3341.26Serine hydroxymethyltransferase OS=Marinomonas sp.... [more]
GLYA_MARAV1.244e-3339.11Serine hydroxymethyltransferase OS=Marinobacter aq... [more]
GLYA_CHLTE1.244e-3339.81Serine hydroxymethyltransferase OS=Chlorobium tepi... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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