CX309283

Overview
NameCX309283
Unique NameCX309283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length322
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF_CHEAL (Profilin OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.858e-33
Identity = 64/76 (84.21%), Postives = 72/76 (94.74%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDI+G+HL+SAAI+GHDG+VWAQS +FPQ KPEE++AIMKDF EPGSLAPTGLHLGGTKYMVIQGEPG VIRGKK
Sbjct:   12 MCDIEGNHLSSAAILGHDGTVWAQSPSFPQLKPEEVSAIMKDFNEPGSLAPTGLHLGGTKYMVIQGEPGDVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF_MUSAC (Profilin OS=Musa acuminata PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.169e-33
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            +CDIDG  LT+AAIVGHDGSVWAQS  FPQ KPEEIAAIMKDF+EPGSLAPTGL+LGGTKYMVIQGEPGAVIRGKK
Sbjct:   12 LCDIDGQCLTAAAIVGHDGSVWAQSDAFPQCKPEEIAAIMKDFDEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF1_SOYBN (Profilin-1 OS=Glycine max GN=PRO1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.406e-33
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            +CDI+G+HLT AAI+G DGSVWAQS++FPQFKPEEI AIM DF EPGSLAPTGL+LGGTKYMVIQGEPGAVIRGKK
Sbjct:   12 LCDIEGNHLTHAAIIGQDGSVWAQSTDFPQFKPEEITAIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF1_RICCO (Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.406e-33
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+G+HLTSAAI+G DGSVWAQSS FPQFKPEEI AIM DF EPGSLAPTGL+L GTKYMVIQGEPGAVIRGKK
Sbjct:   12 MCEIEGNHLTSAAIIGQDGSVWAQSSTFPQFKPEEITAIMNDFNEPGSLAPTGLYLSGTKYMVIQGEPGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF2_WHEAT (Profilin-2 OS=Triticum aestivum GN=PRO2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.221e-33
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 2
Query:    5 CDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            C+IDG HLTSAAI+GHDGSVWA+S NFP+FKPEEIA I+KDFEEPG LAPTGL LGGTKYMVIQGEPG VIRGKK
Sbjct:   13 CEIDGQHLTSAAILGHDGSVWAESPNFPKFKPEEIAGIVKDFEEPGHLAPTGLFLGGTKYMVIQGEPGVVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF1_HEVBR (Profilin-1 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.221e-33
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+G+HLT+AAI+G DGSVWAQSSNFPQFK EEI AIM DF+EPG+LAPTGLHLGGTKYMVIQGE GAVIRGKK
Sbjct:   12 MCEIEGNHLTAAAIIGQDGSVWAQSSNFPQFKSEEITAIMSDFDEPGTLAPTGLHLGGTKYMVIQGEAGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF_ANACO (Profilin OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.204e-32
Identity = 63/76 (82.89%), Postives = 70/76 (92.11%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+IDG HL+SAAI+GHD +VWAQS NFPQFKPEEI+AI+ DFE PGSLAPTGL+LGGTKYMVIQGEPG VIRGKK
Sbjct:   12 MCEIDGQHLSSAAILGHDSTVWAQSPNFPQFKPEEISAILNDFENPGSLAPTGLYLGGTKYMVIQGEPGVVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROFA_ORYSJ (Profilin-A OS=Oryza sativa subsp. japonica GN=Os10g0323600 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.054e-32
Identity = 64/76 (84.21%), Postives = 70/76 (92.11%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+GHHLTSAAIVGHDG+VWAQS+ FPQFKPEE+  IMKDF+EPG LAPTGL LG TKYMVIQGEPGAVIRGKK
Sbjct:   12 MCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFLAPTGLFLGPTKYMVIQGEPGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF1_WHEAT (Profilin-1 (Fragment) OS=Triticum aestivum GN=PRO1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.683e-32
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 2
Query:    5 CDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            C+IDG HLTSAAI+GHDGSVW +S NFP+FKPEEIA I+KDFEEPG LAPTGL LGGTKYMVIQGEPG VIRGKK
Sbjct:   13 CEIDGQHLTSAAILGHDGSVWTESPNFPKFKPEEIAGIVKDFEEPGHLAPTGLFLGGTKYMVIQGEPGVVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF1_LILLO (Profilin-1 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.683e-32
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCD+DG HLT++AIVGHDGS+WAQS+ FPQFKPEEI  IM DF EPGSLAPTGL+L G KYMVIQGEPGAVIRGKK
Sbjct:   12 MCDVDGQHLTASAIVGHDGSIWAQSAGFPQFKPEEITGIMNDFAEPGSLAPTGLYLAGMKYMVIQGEPGAVIRGKK 87          
The following BLAST results are available for this feature:
BLAST of CX309283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
PROF_CHEAL1.858e-3384.21Profilin OS=Chenopodium album PE=1 SV=1[more]
PROF_MUSAC3.169e-3388.16Profilin OS=Musa acuminata PE=1 SV=1[more]
PROF1_SOYBN5.406e-3384.21Profilin-1 OS=Glycine max GN=PRO1 PE=1 SV=1[more]
PROF1_RICCO5.406e-3385.53Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1[more]
PROF2_WHEAT9.221e-3385.33Profilin-2 OS=Triticum aestivum GN=PRO2 PE=2 SV=1[more]
PROF1_HEVBR9.221e-3384.21Profilin-1 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF_ANACO1.204e-3282.89Profilin OS=Ananas comosus PE=1 SV=1[more]
PROFA_ORYSJ2.054e-3284.21Profilin-A OS=Oryza sativa subsp. japonica GN=Os10... [more]
PROF1_WHEAT2.683e-3284.00Profilin-1 (Fragment) OS=Triticum aestivum GN=PRO1... [more]
PROF1_LILLO2.683e-3281.58Profilin-1 OS=Lilium longiflorum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC20001C09SK OF2 Citrus clementina cDNA clone C20001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309283 ID=CX309283; Name=CX309283; organism=Citrus clementina; type=EST; length=322bp
GATGTGCGATATCGACGGCCATCATCTCACCTCAGCTGCGATCGTCGGTC
ACGACGGCAGCGTTTGGGCCCAGAGCTCCAATTTCCCTCAGTTCAAGCCT
GAAGAGATTGCTGCAATCATGAAAGATTTTGAAGAGCCCGGTTCTCTTGC
CCCAACTGGTTTGCACCTTGGAGGCACCAAGTACATGGTAATCCAGGGTG
AGCCTGGAGCTGTGATTCGTGGAAAAAAGGTGATTTATTTCTCTCATAAT
ATTACTTTTTGCATTGATTCTATTACATTATGCGATAGCAGTTAAAATTT
GCAAGTTCTTTTCATGCTTATG
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