CX309283

Overview
NameCX309283
Unique NameCX309283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length322
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig981 contig Ccv1_Contig981:1..322. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF1_HORVU (Profilin-1 OS=Hordeum vulgare GN=PRO1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.504e-32
Identity = 63/75 (84.00%), Postives = 67/75 (89.33%), Query Frame = 2
Query:    5 CDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            C+IDG HLTSAAI+GHDG VW QS NFPQFKPEEIA I+KDF+EPG LAPTGL LGGTKYMVIQGEPG VIRGKK
Sbjct:   13 CEIDGQHLTSAAILGHDGRVWVQSPNFPQFKPEEIAGIIKDFDEPGHLAPTGLFLGGTKYMVIQGEPGVVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF_CYNDA (Profilin OS=Cynodon dactylon GN=PRO1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.576e-32
Identity = 63/76 (82.89%), Postives = 70/76 (92.11%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+GHHLTSAAI+GHDG+VWAQS+ FP FKPEE+A IMKDF+EPG LAPTGL LG TKYMVIQGEPGAVIRGKK
Sbjct:   12 MCEIEGHHLTSAAIIGHDGTVWAQSAAFPAFKPEEMANIMKDFDEPGFLAPTGLFLGPTKYMVIQGEPGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF3_WHEAT (Profilin-3 OS=Triticum aestivum GN=PRO3 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.977e-32
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 2
Query:    5 CDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            C+IDG +LTSAAI+GHDGSVWAQS NFPQFKPEE A I+KDFEEPG LAPTGL LGGTKYMVIQGEPG VIRGKK
Sbjct:   13 CEIDGQNLTSAAILGHDGSVWAQSPNFPQFKPEENAGIVKDFEEPGHLAPTGLFLGGTKYMVIQGEPGVVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF_PRUPE (Profilin OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.806e-32
Identity = 60/76 (78.95%), Postives = 70/76 (92.11%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+G+HL++AAI+GHDGSVWAQS+ FPQ KPEE+  I+ DF EPGSLAPTGL+LGGTKYMVIQGEPGAVIRGKK
Sbjct:   12 MCEIEGNHLSAAAIIGHDGSVWAQSATFPQLKPEEVTGILNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF3_MALDO (Profilin-3 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.019e-31
Identity = 62/76 (81.58%), Postives = 72/76 (94.74%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDIDG+ LT+AAI+G DGSVW+QS++FP FKPEEIAAI+KDF++PG+LAPTGL LGGTKYMVIQGEPGAVIRGKK
Sbjct:   12 MCDIDGNRLTAAAILGQDGSVWSQSASFPAFKPEEIAAILKDFDQPGTLAPTGLFLGGTKYMVIQGEPGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF2_SOYBN (Profilin-2 OS=Glycine max GN=PRO2 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.331e-31
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            +C I+G+HLT AAI+G DGSVW QS++FPQFKPEEI AIM DF EPGSLAPTGL+LGGTKYMVIQGEPGAVIRGKK
Sbjct:   12 LCGIEGNHLTHAAIIGQDGSVWLQSTDFPQFKPEEITAIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF2_PHLPR (Profilin-2/4 OS=Phleum pratense GN=PRO2 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.331e-31
Identity = 60/76 (78.95%), Postives = 69/76 (90.79%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+GHHL SAAI+GHDG+VWAQS++FPQFKPEEI  IMKDF+EPG LAPTG+ + G KYMVIQGEPGAVIRGKK
Sbjct:   12 MCEIEGHHLASAAILGHDGTVWAQSADFPQFKPEEITGIMKDFDEPGHLAPTGMFVAGAKYMVIQGEPGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF5_MAIZE (Profilin-5 OS=Zea mays GN=PRO5 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.739e-31
Identity = 59/76 (77.63%), Postives = 70/76 (92.11%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            +CDI+G HL++AAIVGHDGSVWAQS NFP+ KPEE+A ++KDF+EPG+LAPTGL +GGTKYMVIQGEPG VIRGKK
Sbjct:   12 LCDIEGQHLSAAAIVGHDGSVWAQSENFPELKPEEVAGMIKDFDEPGTLAPTGLFVGGTKYMVIQGEPGVVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF2_AMBAR (Profilin-2 OS=Ambrosia artemisiifolia GN=A0418 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.739e-31
Identity = 61/76 (80.26%), Postives = 69/76 (90.79%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+G+HL++AAI+GHDG VWAQS+ FPQ KPEEI  IM DF EPGSLAPTGL+LGGTKYMVIQGEPGAVIRGKK
Sbjct:   12 MCEIEGNHLSAAAIIGHDGVVWAQSATFPQVKPEEITGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF1_AMBAR (Profilin-1 OS=Ambrosia artemisiifolia GN=D106 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.739e-31
Identity = 61/76 (80.26%), Postives = 69/76 (90.79%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+G+HL++AAI+GHDG VWAQS+ FPQ KPEEI  IM DF EPGSLAPTGL+LGGTKYMVIQGEPGAVIRGKK
Sbjct:   12 MCEIEGNHLSAAAIIGHDGVVWAQSATFPQVKPEEITGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKK 87          
The following BLAST results are available for this feature:
BLAST of CX309283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
PROF1_HORVU3.504e-3284.00Profilin-1 OS=Hordeum vulgare GN=PRO1 PE=2 SV=1[more]
PROF_CYNDA4.576e-3282.89Profilin OS=Cynodon dactylon GN=PRO1 PE=1 SV=1[more]
PROF3_WHEAT5.977e-3285.33Profilin-3 OS=Triticum aestivum GN=PRO3 PE=2 SV=1[more]
PROF_PRUPE7.806e-3278.95Profilin OS=Prunus persica PE=1 SV=1[more]
PROF3_MALDO1.019e-3181.58Profilin-3 OS=Malus domestica PE=1 SV=1[more]
PROF2_SOYBN1.331e-3181.58Profilin-2 OS=Glycine max GN=PRO2 PE=1 SV=1[more]
PROF2_PHLPR1.331e-3178.95Profilin-2/4 OS=Phleum pratense GN=PRO2 PE=1 SV=1[more]
PROF5_MAIZE1.739e-3177.63Profilin-5 OS=Zea mays GN=PRO5 PE=1 SV=1[more]
PROF2_AMBAR1.739e-3180.26Profilin-2 OS=Ambrosia artemisiifolia GN=A0418 PE=... [more]
PROF1_AMBAR1.739e-3180.26Profilin-1 OS=Ambrosia artemisiifolia GN=D106 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC20001C09SK OF2 Citrus clementina cDNA clone C20001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309283 ID=CX309283; Name=CX309283; organism=Citrus clementina; type=EST; length=322bp
GATGTGCGATATCGACGGCCATCATCTCACCTCAGCTGCGATCGTCGGTC
ACGACGGCAGCGTTTGGGCCCAGAGCTCCAATTTCCCTCAGTTCAAGCCT
GAAGAGATTGCTGCAATCATGAAAGATTTTGAAGAGCCCGGTTCTCTTGC
CCCAACTGGTTTGCACCTTGGAGGCACCAAGTACATGGTAATCCAGGGTG
AGCCTGGAGCTGTGATTCGTGGAAAAAAGGTGATTTATTTCTCTCATAAT
ATTACTTTTTGCATTGATTCTATTACATTATGCGATAGCAGTTAAAATTT
GCAAGTTCTTTTCATGCTTATG
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