CX309283

Overview
NameCX309283
Unique NameCX309283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length322
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF_CUCME (Profilin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.271e-31
Identity = 60/76 (78.95%), Postives = 70/76 (92.11%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+G+HLTSAAI+G DGSVWAQS NFPQ KPEE+A I+ DF +PG+LAPTGL++GGTKYMVIQGEPGAVIRGKK
Sbjct:   12 MCEIEGNHLTSAAIIGQDGSVWAQSQNFPQLKPEEVAGIVGDFADPGTLAPTGLYIGGTKYMVIQGEPGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF2_HEVBR (Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.966e-31
Identity = 60/76 (78.95%), Postives = 70/76 (92.11%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+G+HL++AAI+G DGSVWAQS+NFPQFK EEI  IM DF EPG+LAPTGL++GGTKYMVIQGEPGAVIRGKK
Sbjct:   12 MCEIEGNHLSAAAIIGQDGSVWAQSANFPQFKSEEITGIMSDFHEPGTLAPTGLYIGGTKYMVIQGEPGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF4_MAIZE (Profilin-4 OS=Zea mays GN=PRO4 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.874e-31
Identity = 59/76 (77.63%), Postives = 70/76 (92.11%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+G HL++AAIVGHDGSVWAQS +FP+ KPEE+A I+KDF+EPG+LAPTGL +GGTKYMVIQGEPG VIRGKK
Sbjct:   12 MCEIEGQHLSAAAIVGHDGSVWAQSESFPELKPEEVAGIIKDFDEPGTLAPTGLFVGGTKYMVIQGEPGVVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF2_MALDO (Profilin-2 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.874e-31
Identity = 59/76 (77.63%), Postives = 69/76 (90.79%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+G+HL++AAI+GH+GSVWAQS+ FPQ KPEE+  IM DF EPGSLAPTGL+LGGTKYMVIQGEPG VIRGKK
Sbjct:   12 MCEIEGNHLSAAAIIGHNGSVWAQSATFPQLKPEEVTGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGVVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF_CAPAN (Profilin OS=Capsicum annuum PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.060e-31
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+G+ LTSAAI+G DGSVWAQS+ FPQFKPEEI AIM DF EPG+LAPTGL+LGGTKYMVIQGE GAVIRGKK
Sbjct:   12 MCEIEGNRLTSAAIIGQDGSVWAQSATFPQFKPEEITAIMNDFAEPGTLAPTGLYLGGTKYMVIQGEAGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF_ARAHY (Profilin OS=Arachis hypogaea PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.060e-31
Identity = 61/76 (80.26%), Postives = 69/76 (90.79%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            +C+I+G HL+SAAI+G DG VWAQSS+FPQFKPEEI AIM DF EPGSLAPTGL+LGGTKYMVIQGEPGA+I GKK
Sbjct:   12 LCEIEGDHLSSAAILGQDGGVWAQSSHFPQFKPEEITAIMNDFAEPGSLAPTGLYLGGTKYMVIQGEPGAIIPGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF1_PHLPR (Profilin-1 OS=Phleum pratense GN=PRO1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.060e-31
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+GHHL SAAI+GHDG+VWAQS++FPQFKPEEI  IMKDF+EPG LAPTG+ + G KYMVIQGEPG VIRGKK
Sbjct:   12 MCEIEGHHLASAAILGHDGTVWAQSADFPQFKPEEITGIMKDFDEPGHLAPTGMFVAGAKYMVIQGEPGRVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF_FRAAN (Profilin OS=Fragaria ananassa PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.608e-31
Identity = 58/76 (76.32%), Postives = 71/76 (93.42%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+G+HL++AAI+G DGSVWAQS+ FPQ KPEE+  I++DF+EPG+LAPTGL+LGGTKYMVIQGEPGAVIRGKK
Sbjct:   12 MCEIEGNHLSAAAIIGQDGSVWAQSATFPQLKPEEVTGIVRDFDEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF3_OLEEU (Profilin-3 OS=Olea europaea GN=PRO3 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.630e-31
Identity = 64/79 (81.01%), Postives = 68/79 (86.08%), Query Frame = 2
Query:    2 MCDIDGHH---LTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDI+GH    LT+AAIVGHDGSVWAQS+ FPQFKPEE+  IM DF EPG LAPTGLHLGGTKYMVIQGE GAVIRGKK
Sbjct:   12 MCDIEGHEGHRLTAAAIVGHDGSVWAQSATFPQFKPEEMNGIMTDFNEPGHLAPTGLHLGGTKYMVIQGEAGAVIRGKK 90          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF3_MAIZE (Profilin-3 OS=Zea mays GN=PRO3 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.630e-31
Identity = 61/76 (80.26%), Postives = 69/76 (90.79%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+GHHL+SAAIVGHDG+VWAQS+ FPQFKPEE+  I+KDF+EPG LAP GL LG TKYMVIQGEPGAVIRGKK
Sbjct:   12 MCEIEGHHLSSAAIVGHDGAVWAQSTAFPQFKPEEMTNIIKDFDEPGFLAPIGLFLGPTKYMVIQGEPGAVIRGKK 87          
The following BLAST results are available for this feature:
BLAST of CX309283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
PROF_CUCME2.271e-3178.95Profilin OS=Cucumis melo PE=1 SV=1[more]
PROF2_HEVBR2.966e-3178.95Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1[more]
PROF4_MAIZE3.874e-3177.63Profilin-4 OS=Zea mays GN=PRO4 PE=1 SV=1[more]
PROF2_MALDO3.874e-3177.63Profilin-2 OS=Malus domestica PE=1 SV=1[more]
PROF_CAPAN5.060e-3181.58Profilin OS=Capsicum annuum PE=1 SV=1[more]
PROF_ARAHY5.060e-3180.26Profilin OS=Arachis hypogaea PE=1 SV=1[more]
PROF1_PHLPR5.060e-3177.63Profilin-1 OS=Phleum pratense GN=PRO1 PE=1 SV=1[more]
PROF_FRAAN6.608e-3176.32Profilin OS=Fragaria ananassa PE=1 SV=1[more]
PROF3_OLEEU8.630e-3181.01Profilin-3 OS=Olea europaea GN=PRO3 PE=1 SV=1[more]
PROF3_MAIZE8.630e-3180.26Profilin-3 OS=Zea mays GN=PRO3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC20001C09SK OF2 Citrus clementina cDNA clone C20001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309283 ID=CX309283; Name=CX309283; organism=Citrus clementina; type=EST; length=322bp
GATGTGCGATATCGACGGCCATCATCTCACCTCAGCTGCGATCGTCGGTC
ACGACGGCAGCGTTTGGGCCCAGAGCTCCAATTTCCCTCAGTTCAAGCCT
GAAGAGATTGCTGCAATCATGAAAGATTTTGAAGAGCCCGGTTCTCTTGC
CCCAACTGGTTTGCACCTTGGAGGCACCAAGTACATGGTAATCCAGGGTG
AGCCTGGAGCTGTGATTCGTGGAAAAAAGGTGATTTATTTCTCTCATAAT
ATTACTTTTTGCATTGATTCTATTACATTATGCGATAGCAGTTAAAATTT
GCAAGTTCTTTTCATGCTTATG
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