CX309283

Overview
NameCX309283
Unique NameCX309283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length322
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF2_OLEEU (Profilin-2 OS=Olea europaea GN=PRO2 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.630e-31
Identity = 64/79 (81.01%), Postives = 68/79 (86.08%), Query Frame = 2
Query:    2 MCDIDGHH---LTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDI+GH    LT+AAIVGHDGSVWAQS+ FPQFKPEE+  IM DF EPG LAPTGLHLGGTKYMVIQGE GAVIRGKK
Sbjct:   12 MCDIEGHEGHRLTAAAIVGHDGSVWAQSATFPQFKPEEMNGIMTDFNEPGHLAPTGLHLGGTKYMVIQGEAGAVIRGKK 90          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF1_OLEEU (Profilin-1 OS=Olea europaea GN=PRO1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.630e-31
Identity = 64/79 (81.01%), Postives = 68/79 (86.08%), Query Frame = 2
Query:    2 MCDIDGHH---LTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDI+GH    LT+AAIVGHDGSVWAQS+ FPQFKPEE+  IM DF EPG LAPTGLHLGGTKYMVIQGE GAVIRGKK
Sbjct:   12 MCDIEGHEDHRLTAAAIVGHDGSVWAQSATFPQFKPEEMNGIMTDFNEPGHLAPTGLHLGGTKYMVIQGEAGAVIRGKK 90          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF_PRUDU (Profilin OS=Prunus dulcis PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.127e-30
Identity = 61/76 (80.26%), Postives = 70/76 (92.11%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDIDG+ LT+AAI+G DGSVW+QS+ FP FKPEEIAAI+KDF++PG+LAPTGL LGGTKYMVIQGE GAVIRGKK
Sbjct:   12 MCDIDGNRLTAAAILGQDGSVWSQSATFPAFKPEEIAAILKDFDQPGTLAPTGLFLGGTKYMVIQGEAGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF4_ARATH (Profilin-4 OS=Arabidopsis thaliana GN=PRO4 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.923e-30
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 2
Query:    2 MCDI---DGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCD+    GHHLT+AAI+GHDGSVWAQS+NFPQFKP+EI  IMKDF+EPG LAPTG+ L G KYMVIQGEP AVIRGKK
Sbjct:   12 MCDVGDGQGHHLTAAAIIGHDGSVWAQSANFPQFKPQEITDIMKDFDEPGHLAPTGMFLAGLKYMVIQGEPNAVIRGKK 90          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF1_PHAVU (Profilin-1 OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.923e-30
Identity = 58/76 (76.32%), Postives = 70/76 (92.11%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            +C+I+G+HLT AAI+G DGSVWA+S++FPQFKPEEI  IM DF EPG+LAPTGL++GGTKYMVIQGEPG+VIRGKK
Sbjct:   12 LCEIEGNHLTHAAILGQDGSVWAKSASFPQFKPEEITGIMNDFNEPGTLAPTGLYIGGTKYMVIQGEPGSVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF_BETVE (Profilin OS=Betula verrucosa GN=BETVII PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.280e-30
Identity = 64/78 (82.05%), Postives = 67/78 (85.90%), Query Frame = 2
Query:    2 MCDIDGHHLTS--AAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDIDG    S  +AIVGHDGSVWAQSS+FPQFKP+EI  IMKDFEEPG LAPTGLHLGG KYMVIQGE GAVIRGKK
Sbjct:   12 MCDIDGQASNSLASAIVGHDGSVWAQSSSFPQFKPQEITGIMKDFEEPGHLAPTGLHLGGIKYMVIQGEAGAVIRGKK 89          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF1_TOBAC (Profilin-1 OS=Nicotiana tabacum GN=PRO1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.280e-30
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 2
Query:    2 MCDIDG---HHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            M DI+G   HHL +AAI+GHDGSVWAQSS FP+FKPEEI  IMKDF+EPG LAPTGL LGG KYMVIQGEPGAVIRGKK
Sbjct:   12 MADIEGQQGHHLAAAAILGHDGSVWAQSSTFPKFKPEEITNIMKDFDEPGHLAPTGLFLGGAKYMVIQGEPGAVIRGKK 90          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF3_LILLO (Profilin-3 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.283e-30
Identity = 59/76 (77.63%), Postives = 67/76 (88.16%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+IDG HLT+AAI+GH+G +WAQS +FPQ KPE+ AAIM+DF EPGSLAPTGL LG  KYMVIQGEPGAVIRGKK
Sbjct:   12 MCEIDGQHLTAAAIIGHEGGIWAQSDSFPQVKPEQTAAIMRDFAEPGSLAPTGLFLGDGKYMVIQGEPGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF_PRUAV (Profilin OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.594e-30
Identity = 60/76 (78.95%), Postives = 69/76 (90.79%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDIDG+ LT+AAI+G DGSVW+QS+ FP FKPEEIAAI+KD ++PG+LAPTGL LGGTKYMVIQGE GAVIRGKK
Sbjct:   12 MCDIDGNRLTAAAILGQDGSVWSQSATFPAFKPEEIAAILKDLDQPGTLAPTGLFLGGTKYMVIQGEAGAVIRGKK 87          
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF3_PHLPR (Profilin-3 OS=Phleum pratense GN=PRO3 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.594e-30
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 2
Query:    2 MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MC+I+GHHL SAAI GHDG+VWAQS++FPQFKPEEI  IMKD +EPG LAPTG+ +   KYMVIQGEPGAVIRGKK
Sbjct:   12 MCEIEGHHLASAAIFGHDGTVWAQSADFPQFKPEEITGIMKDLDEPGHLAPTGMFVAAAKYMVIQGEPGAVIRGKK 87          
The following BLAST results are available for this feature:
BLAST of CX309283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
PROF2_OLEEU8.630e-3181.01Profilin-2 OS=Olea europaea GN=PRO2 PE=1 SV=1[more]
PROF1_OLEEU8.630e-3181.01Profilin-1 OS=Olea europaea GN=PRO1 PE=1 SV=1[more]
PROF_PRUDU1.127e-3080.26Profilin OS=Prunus dulcis PE=1 SV=1[more]
PROF4_ARATH1.923e-3077.22Profilin-4 OS=Arabidopsis thaliana GN=PRO4 PE=2 SV... [more]
PROF1_PHAVU1.923e-3076.32Profilin-1 OS=Phaseolus vulgaris PE=1 SV=1[more]
PROF_BETVE3.280e-3082.05Profilin OS=Betula verrucosa GN=BETVII PE=1 SV=1[more]
PROF1_TOBAC3.280e-3079.75Profilin-1 OS=Nicotiana tabacum GN=PRO1 PE=2 SV=1[more]
PROF3_LILLO4.283e-3077.63Profilin-3 OS=Lilium longiflorum PE=2 SV=1[more]
PROF_PRUAV5.594e-3078.95Profilin OS=Prunus avium PE=1 SV=1[more]
PROF3_PHLPR5.594e-3076.32Profilin-3 OS=Phleum pratense GN=PRO3 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC20001C09SK OF2 Citrus clementina cDNA clone C20001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309283 ID=CX309283; Name=CX309283; organism=Citrus clementina; type=EST; length=322bp
GATGTGCGATATCGACGGCCATCATCTCACCTCAGCTGCGATCGTCGGTC
ACGACGGCAGCGTTTGGGCCCAGAGCTCCAATTTCCCTCAGTTCAAGCCT
GAAGAGATTGCTGCAATCATGAAAGATTTTGAAGAGCCCGGTTCTCTTGC
CCCAACTGGTTTGCACCTTGGAGGCACCAAGTACATGGTAATCCAGGGTG
AGCCTGGAGCTGTGATTCGTGGAAAAAAGGTGATTTATTTCTCTCATAAT
ATTACTTTTTGCATTGATTCTATTACATTATGCGATAGCAGTTAAAATTT
GCAAGTTCTTTTCATGCTTATG
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