CX309283

Overview
NameCX309283
Unique NameCX309283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length322
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF1_ARTVU (Profilin-1 OS=Artemisia vulgaris PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.901e-26
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 2 
Query:    2 MCDIDG--HHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDI+G   HLTSAAI G DG+VWA+S++FP+FKP EI AI+K+F E G LAPTGL LGG KYMVIQGE GAVIRGKK
Sbjct:   12 MCDIEGTGQHLTSAAIFGTDGTVWAKSASFPEFKPNEIDAIIKEFNEAGQLAPTGLFLGGAKYMVIQGEAGAVIRGKK 89
[Close]
BLAST of CX309283 vs. ExPASy Swiss-Prot
Match: PROF2_ARTVU (Profilin-2 OS=Artemisia vulgaris PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.207e-24
Identity = 53/78 (67.95%), Postives = 64/78 (82.05%), Query Frame = 2 
Query:    2 MCDIDG--HHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 229
            MCDI+G   HLT+AAI+G DG+VWA+S  FP+FKPEE+  I+ +F E G+LAPTGL LGG KYMV+QGE GAVIRGKK
Sbjct:   12 MCDIEGTGQHLTAAAILGLDGTVWAKSDKFPEFKPEEMKGIINEFNEVGTLAPTGLFLGGAKYMVLQGEAGAVIRGKK 89
The following BLAST results are available for this feature:
BLAST of CX309283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
PROF1_ARTVU4.901e-2673.08Profilin-1 OS=Artemisia vulgaris PE=1 SV=3[more]
PROF2_ARTVU1.207e-2467.95Profilin-2 OS=Artemisia vulgaris PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC20001C09SK OF2 Citrus clementina cDNA clone C20001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309283 ID=CX309283; Name=CX309283; organism=Citrus clementina; type=EST; length=322bp
GATGTGCGATATCGACGGCCATCATCTCACCTCAGCTGCGATCGTCGGTC
ACGACGGCAGCGTTTGGGCCCAGAGCTCCAATTTCCCTCAGTTCAAGCCT
GAAGAGATTGCTGCAATCATGAAAGATTTTGAAGAGCCCGGTTCTCTTGC
CCCAACTGGTTTGCACCTTGGAGGCACCAAGTACATGGTAATCCAGGGTG
AGCCTGGAGCTGTGATTCGTGGAAAAAAGGTGATTTATTTCTCTCATAAT
ATTACTTTTTGCATTGATTCTATTACATTATGCGATAGCAGTTAAAATTT
GCAAGTTCTTTTCATGCTTATG
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