CX309298

Overview
NameCX309298
Unique NameCX309298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: BGLA_THENN (Beta-glucosidase A OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=bglA PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 4.990e-18
Identity = 48/145 (33.10%), Postives = 79/145 (54.48%), Query Frame = 3
Query:   30 VNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILN 464
            VN +G++ YN++ID LL K I PF+T+  +D P  ++ K G W + +  + F  ++ + F++FGDRVK+W T+NEP +   + +  G H P                   F   HNL+ +HA +V ++R   +  + G IGI+ N
Sbjct:   91 VNQKGLDFYNRIIDTLLEKNITPFITIYHWDLPFSLQLK-GGWANRDIADWFAEYSRVLFENFGDRVKHWITLNEPWVVAIVGHLYGVHAPGM-----------KDIYVAFHTVHNLLRAHAKSVKVFR---ETVKDGKIGIVFN 220          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: BGLA_THENE (Beta-glucosidase A (Fragment) OS=Thermotoga neapolitana GN=bglA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.990e-18
Identity = 48/145 (33.10%), Postives = 79/145 (54.48%), Query Frame = 3
Query:   30 VNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILN 464
            VN +G++ YN++ID LL K I PF+T+  +D P  ++ K G W + +  + F  ++ + F++FGDRVK+W T+NEP +   + +  G H P                   F   HNL+ +HA +V ++R   +  + G IGI+ N
Sbjct:   91 VNQKGLDFYNRIIDTLLEKNITPFITIYHWDLPFSLQLK-GGWANRDIADWFAEYSRVLFENFGDRVKHWITLNEPWVVAIVGHLYGVHAPGM-----------KDIYVAFHTVHNLLRAHAKSVKVFR---ETVKDGKIGIVFN 220          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: GMUD_BACSU (6-phospho-beta-glucosidase gmuD OS=Bacillus subtilis GN=gmuD PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.112e-17
Identity = 53/146 (36.30%), Postives = 78/146 (53.42%), Query Frame = 3
Query:   27 DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILN 464
            ++N +  + YN +ID L+  GI+PFV L  FD P  ++ K G W++ E+ + +  +A  CF+ FG RVK WFT NEP + V   Y    H P          ++ + +E   +  H + LS A A+  YR   +  Q G IGIILN
Sbjct:   96 EINDKAADFYNNVIDELIANGIEPFVNLFHFDMPMALQ-KIGGWVNRETVDAYENYARTCFRLFGGRVKKWFTHNEPIVPVEGGYLYDFHYP----------NKVDFKEAVQVGFHTM-LSSARAIQAYR---EMKQDGKIGIILN 226          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: BGLA_CLOTH (Beta-glucosidase A OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=bglA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.234e-17
Identity = 52/145 (35.86%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   30 VNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILN 464
            +N +G++ Y +L + LL  GI P +TL  +D PQ+++DK G W + ++ + F  ++++ FK+ GD V  WFT NEP +   L + LG H P       G      S E     +HNL+LSH  AV ++R   + +    IGI LN
Sbjct:   93 LNQKGLDFYKRLTNLLLENGIMPAITLYHWDLPQKLQDK-GGWKNRDTTDYFTEYSEVIFKNLGDIVPIWFTHNEPGVVSLLGHFLGIHAP-------GIKDLRTSLE----VSHNLLLSHGKAVKLFR---EMNIDAQIGIALN 222          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: BGLC_BACSU (Aryl-phospho-beta-D-glucosidase bglC OS=Bacillus subtilis GN=bglC PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.576e-16
Identity = 46/131 (35.11%), Postives = 68/131 (51.91%), Query Frame = 3
Query:   27 DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAA-HNLILSHATAVDIYR 416
            ++N  G+  Y+ LID LL   I+P +TL  +D PQ + D+YG + S    EDF ++    +K FGDRVKYW T+NE N      +    HPP            G  + + F  A H   L++A A++ +R
Sbjct:   95 EINEAGLAFYDSLIDELLSHHIEPVLTLYHWDLPQALMDEYGGFESRNIIEDFNHYCITLYKRFGDRVKYWVTLNEQNYNFNHGFITAMHPP------------GVKDRKRFYEANHIAFLANAKAIESFR 213          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LACG_LACRH (6-phospho-beta-galactosidase OS=Lactobacillus rhamnosus GN=lacG PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.670e-16
Identity = 50/143 (34.97%), Postives = 72/143 (50.35%), Query Frame = 3
Query:   30 VNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGII 458
            V   G+  Y++L  A     + PFVTL  FD+P+ +    G WLS E  EDF  +A  CF+ F + +K+W TINEP       Y  G  PPA          +    ++ F A HN I++HA  V++Y++       G IGI+
Sbjct:   88 VEPRGVAFYHRLFAACAKHHLIPFVTLHHFDTPERLH-AIGDWLSQEMLEDFVEYARFCFEEFPE-IKHWITINEPTSMAVQQYTSGTFPPA----------ETGHFDKTFQAEHNQIVAHARIVNLYKS---MGLDGEIGIV 215          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LACG_CLOAB (6-phospho-beta-galactosidase OS=Clostridium acetobutylicum GN=lacG PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.966e-16
Identity = 48/144 (33.33%), Postives = 77/144 (53.47%), Query Frame = 3
Query:   27 DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGII 458
            +VN +G+  Y+ LID  +   ++PFVTL  FD+P  +  K G WL+  + + F  FA +CF++ GDRVK W T NE        Y +G  PP+         +Q         + HN++++HA  V++Y++    +  G IGI+
Sbjct:   86 EVNPKGLKFYSDLIDECIKNNVEPFVTLHHFDTPLTLF-KDGDWLNRNNIDYFVRFAKVCFEALGDRVKKWITFNEAWAVAQNGYIIGNFPPS-IKYDIPKAAQ---------SMHNMMVAHAKVVELYKS---MNLDGEIGIV 215          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LACG_LACAC (6-phospho-beta-galactosidase OS=Lactobacillus acidophilus GN=lacG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.027e-15
Identity = 51/144 (35.42%), Postives = 76/144 (52.78%), Query Frame = 3
Query:   27 DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGII 458
            +V   G++ Y+KL      + ++PFVTL  FD+P+ + +  G +L+ E  +DF  +AD CFK F + VKYW TINE        Y +G  PPA     FG        ++ F   HN ++ HA AV +++    K   G IGI+
Sbjct:   87 EVKPNGVDFYHKLFAECDARHVEPFVTLHHFDTPEGLHED-GDFLTHEKMDDFVEYADYCFKEFPE-VKYWITINEIRSVAVDQYIIGNFPPA---DTFG-------FDKMFQTHHNQMVGHARAVKLFKHDGSK---GEIGIV 215          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: BGLA_PAEPO (Beta-glucosidase A OS=Paenibacillus polymyxa GN=bglA PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.347e-14
Identity = 45/146 (30.82%), Postives = 75/146 (51.37%), Query Frame = 3
Query:   27 DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILN 464
            +VN EG+++Y++++D L   GI+PF TL  +D PQ ++D  G W +  + + F  FA+  F+ F  ++++W T NEP     LS  LG H P              + +      H+L+++H  +V  +R   +    G IGI  N
Sbjct:   92 EVNQEGLDYYHRVVDLLNDNGIEPFCTLYHWDLPQALQDA-GGWGNRRTIQAFVQFAETMFREFHGKIQHWLTFNEPWCIAFLSNMLGVHAPGL-----------TNLQTAIDVGHHLLVAHGLSVRRFR---ELGTSGQIGIAPN 222          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LACG_STAES (6-phospho-beta-galactosidase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=lacG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.312e-13
Identity = 47/144 (32.64%), Postives = 78/144 (54.17%), Query Frame = 3
Query:   27 DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGII 458
            +VN +G+ +Y+ L      + ++PFVTL  FD+P E+  K G +L+ ++ + F  +A+ CFK F + VKYW T NE        Y +G  PP      F         E+ F + HN++++HA AV +++ +  K   G IG++
Sbjct:   87 EVNQKGVEYYHNLFKECHKRHVEPFVTLHHFDTP-EVLHKDGDFLNRKTIDYFVDYAEFCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPG-IKYDF---------EKVFQSHHNMMVAHARAVKLFKDENYK---GEIGVV 215          
The following BLAST results are available for this feature:
BLAST of CX309298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
BGLA_THENN4.990e-1833.10Beta-glucosidase A OS=Thermotoga neapolitana (stra... [more]
BGLA_THENE4.990e-1833.10Beta-glucosidase A (Fragment) OS=Thermotoga neapol... [more]
GMUD_BACSU1.112e-1736.306-phospho-beta-glucosidase gmuD OS=Bacillus subtil... [more]
BGLA_CLOTH3.234e-1735.86Beta-glucosidase A OS=Clostridium thermocellum (st... [more]
BGLC_BACSU3.576e-1635.11Aryl-phospho-beta-D-glucosidase bglC OS=Bacillus s... [more]
LACG_LACRH4.670e-1634.976-phospho-beta-galactosidase OS=Lactobacillus rham... [more]
LACG_CLOAB7.966e-1633.336-phospho-beta-galactosidase OS=Clostridium acetob... [more]
LACG_LACAC3.027e-1535.426-phospho-beta-galactosidase OS=Lactobacillus acid... [more]
BGLA_PAEPO3.347e-1430.82Beta-glucosidase A OS=Paenibacillus polymyxa GN=bg... [more]
LACG_STAES6.312e-1332.646-phospho-beta-galactosidase OS=Staphylococcus epi... [more]

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Properties
Property NameValue
Genbank descriptionC20002C09SK OF2 Citrus clementina cDNA clone C20002C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309298 ID=CX309298; Name=CX309298; organism=Citrus clementina; type=EST; length=467bp
CNNNNNNNNNNNNNNNNNNNNNNNGGGACGTCAATTCAGAGGGTATTAAC
CACTACAACAAGCTCATTGATGCCCTCTTACTGAAAGGGATCCAGCCATT
TGTGACACTGACTCAATTTGATAGTCCTCAAGAAATTGAAGACAAATACG
GAGCCTGGCTAAGCCCTGAATCACAGGAGGATTTTGGATATTTTGCAGAC
ATTTGTTTTAAATCTTTCGGAGACCGAGTGAAATACTGGTTCACCATCAA
TGAGCCAAATATGCAGGTTACCCTTAGTTATCGTTTAGGCTGCCATCCCC
CAGCTCATTGCTCGCAGCCATTTGGAAATTGCAGTCAGGGCAATTCAGAG
GAGGAGCCTTTTATAGCAGCTCACAATCTCATCTTATCGCATGCAACTGC
AGTTGATATATACCGAACCAAATACCAGAAAGATCAAGGAGGCAGCATTG
GCATTATCTTAAACACA
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