CX309298

Overview
NameCX309298
Unique NameCX309298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LACG_STAEQ (6-phospho-beta-galactosidase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=lacG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.312e-13
Identity = 47/144 (32.64%), Postives = 78/144 (54.17%), Query Frame = 3
Query:   27 DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGII 458
            +VN +G+ +Y+ L      + ++PFVTL  FD+P E+  K G +L+ ++ + F  +A+ CFK F + VKYW T NE        Y +G  PP      F         E+ F + HN++++HA AV +++ +  K   G IG++
Sbjct:   87 EVNQKGVEYYHNLFKECHKRHVEPFVTLHHFDTP-EVLHKDGDFLNRKTIDYFVDYAEFCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPG-IKYDF---------EKVFQSHHNMMVAHARAVKLFKDENYK---GEIGVV 215          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LACG_STAAW (6-phospho-beta-galactosidase OS=Staphylococcus aureus (strain MW2) GN=lacG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.077e-12
Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = 3
Query:   27 DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQG--GSIGII 458
            +VN +G+ +Y+KL      + ++PFVTL  FD+P E+  K G +L+ ++ + F  +A+ CFK F + VKYW T NE        Y +G  PP      F         E+ F + HN++++HA AV ++     KD G  G IG++
Sbjct:   87 EVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTP-EVLHKDGDFLNRKTIDYFVDYAEYCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPG-IKYDF---------EKVFQSHHNMMVAHARAVKLF-----KDGGYQGEIGVV 215          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LACG_STAAU (6-phospho-beta-galactosidase OS=Staphylococcus aureus GN=lacG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.077e-12
Identity = 48/144 (33.33%), Postives = 78/144 (54.17%), Query Frame = 3
Query:   27 DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGII 458
            +VN +G+ +Y+KL      + ++PFVTL  FD+P E+  K G +L+ ++ + F  +A+ CFK F + VKYW T NE        Y +G  PP      F         E+ F + HN++++HA AV +++    K   G IG++
Sbjct:   87 EVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTP-EVLHKDGDFLNRKTIDYFVDYAEYCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPG-IKYDF---------EKVFQSHHNMMVAHARAVKLFKDGGYK---GEIGVV 215          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LACG_STAAT (6-phospho-beta-galactosidase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=lacG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.077e-12
Identity = 48/144 (33.33%), Postives = 78/144 (54.17%), Query Frame = 3
Query:   27 DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGII 458
            +VN +G+ +Y+KL      + ++PFVTL  FD+P E+  K G +L+ ++ + F  +A+ CFK F + VKYW T NE        Y +G  PP      F         E+ F + HN++++HA AV +++    K   G IG++
Sbjct:   87 EVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTP-EVLHKDGDFLNRKTIDYFVDYAEYCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPG-IKYDF---------EKVFQSHHNMMVAHARAVKLFKDGGYK---GEIGVV 215          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LACG_STAAS (6-phospho-beta-galactosidase OS=Staphylococcus aureus (strain MSSA476) GN=lacG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.077e-12
Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = 3
Query:   27 DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQG--GSIGII 458
            +VN +G+ +Y+KL      + ++PFVTL  FD+P E+  K G +L+ ++ + F  +A+ CFK F + VKYW T NE        Y +G  PP      F         E+ F + HN++++HA AV ++     KD G  G IG++
Sbjct:   87 EVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTP-EVLHKDGDFLNRKTIDYFVDYAEYCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPG-IKYDF---------EKVFQSHHNMMVAHARAVKLF-----KDGGYQGEIGVV 215          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LACG_STAAR (6-phospho-beta-galactosidase OS=Staphylococcus aureus (strain MRSA252) GN=lacG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.077e-12
Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = 3
Query:   27 DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQG--GSIGII 458
            +VN +G+ +Y+KL      + ++PFVTL  FD+P E+  K G +L+ ++ + F  +A+ CFK F + VKYW T NE        Y +G  PP      F         E+ F + HN++++HA AV ++     KD G  G IG++
Sbjct:   87 EVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTP-EVLHKDGDFLNRKTIDYFVDYAEYCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPG-IKYDF---------EKVFQSHHNMMVAHARAVKLF-----KDGGYQGEIGVV 215          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LACG_STAAN (6-phospho-beta-galactosidase OS=Staphylococcus aureus (strain N315) GN=lacG PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.077e-12
Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = 3
Query:   27 DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQG--GSIGII 458
            +VN +G+ +Y+KL      + ++PFVTL  FD+P E+  K G +L+ ++ + F  +A+ CFK F + VKYW T NE        Y +G  PP      F         E+ F + HN++++HA AV ++     KD G  G IG++
Sbjct:   87 EVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTP-EVLHKDGDFLNRKTIDYFVDYAEYCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPG-IKYDF---------EKVFQSHHNMMVAHARAVKLF-----KDGGYQGEIGVV 215          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LACG_STAAM (6-phospho-beta-galactosidase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=lacG PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.077e-12
Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = 3
Query:   27 DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQG--GSIGII 458
            +VN +G+ +Y+KL      + ++PFVTL  FD+P E+  K G +L+ ++ + F  +A+ CFK F + VKYW T NE        Y +G  PP      F         E+ F + HN++++HA AV ++     KD G  G IG++
Sbjct:   87 EVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTP-EVLHKDGDFLNRKTIDYFVDYAEYCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPG-IKYDF---------EKVFQSHHNMMVAHARAVKLF-----KDGGYQGEIGVV 215          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LACG_STAAE (6-phospho-beta-galactosidase OS=Staphylococcus aureus (strain Newman) GN=lacG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.077e-12
Identity = 48/144 (33.33%), Postives = 78/144 (54.17%), Query Frame = 3
Query:   27 DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGII 458
            +VN +G+ +Y+KL      + ++PFVTL  FD+P E+  K G +L+ ++ + F  +A+ CFK F + VKYW T NE        Y +G  PP      F         E+ F + HN++++HA AV +++    K   G IG++
Sbjct:   87 EVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTP-EVLHKDGDFLNRKTIDYFVDYAEYCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPG-IKYDF---------EKVFQSHHNMMVAHARAVKLFKDGGYK---GEIGVV 215          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LACG_STAAC (6-phospho-beta-galactosidase OS=Staphylococcus aureus (strain COL) GN=lacG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.077e-12
Identity = 48/144 (33.33%), Postives = 78/144 (54.17%), Query Frame = 3
Query:   27 DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGII 458
            +VN +G+ +Y+KL      + ++PFVTL  FD+P E+  K G +L+ ++ + F  +A+ CFK F + VKYW T NE        Y +G  PP      F         E+ F + HN++++HA AV +++    K   G IG++
Sbjct:   87 EVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTP-EVLHKDGDFLNRKTIDYFVDYAEYCFKEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPG-IKYDF---------EKVFQSHHNMMVAHARAVKLFKDGGYK---GEIGVV 215          
The following BLAST results are available for this feature:
BLAST of CX309298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
LACG_STAEQ6.312e-1332.646-phospho-beta-galactosidase OS=Staphylococcus epi... [more]
LACG_STAAW1.077e-1234.256-phospho-beta-galactosidase OS=Staphylococcus aur... [more]
LACG_STAAU1.077e-1233.336-phospho-beta-galactosidase OS=Staphylococcus aur... [more]
LACG_STAAT1.077e-1233.336-phospho-beta-galactosidase OS=Staphylococcus aur... [more]
LACG_STAAS1.077e-1234.256-phospho-beta-galactosidase OS=Staphylococcus aur... [more]
LACG_STAAR1.077e-1234.256-phospho-beta-galactosidase OS=Staphylococcus aur... [more]
LACG_STAAN1.077e-1234.256-phospho-beta-galactosidase OS=Staphylococcus aur... [more]
LACG_STAAM1.077e-1234.256-phospho-beta-galactosidase OS=Staphylococcus aur... [more]
LACG_STAAE1.077e-1233.336-phospho-beta-galactosidase OS=Staphylococcus aur... [more]
LACG_STAAC1.077e-1233.336-phospho-beta-galactosidase OS=Staphylococcus aur... [more]

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Properties
Property NameValue
Genbank descriptionC20002C09SK OF2 Citrus clementina cDNA clone C20002C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309298 ID=CX309298; Name=CX309298; organism=Citrus clementina; type=EST; length=467bp
CNNNNNNNNNNNNNNNNNNNNNNNGGGACGTCAATTCAGAGGGTATTAAC
CACTACAACAAGCTCATTGATGCCCTCTTACTGAAAGGGATCCAGCCATT
TGTGACACTGACTCAATTTGATAGTCCTCAAGAAATTGAAGACAAATACG
GAGCCTGGCTAAGCCCTGAATCACAGGAGGATTTTGGATATTTTGCAGAC
ATTTGTTTTAAATCTTTCGGAGACCGAGTGAAATACTGGTTCACCATCAA
TGAGCCAAATATGCAGGTTACCCTTAGTTATCGTTTAGGCTGCCATCCCC
CAGCTCATTGCTCGCAGCCATTTGGAAATTGCAGTCAGGGCAATTCAGAG
GAGGAGCCTTTTATAGCAGCTCACAATCTCATCTTATCGCATGCAACTGC
AGTTGATATATACCGAACCAAATACCAGAAAGATCAAGGAGGCAGCATTG
GCATTATCTTAAACACA
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