CX309298

Overview
NameCX309298
Unique NameCX309298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: BGL24_ARATH (Beta-glucosidase 24 OS=Arabidopsis thaliana GN=BGLU24 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.226e-24
Identity = 59/149 (39.60%), Postives = 89/149 (59.73%), Query Frame = 3
Query:   30 VNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPF-------GNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGI 455
            V+  G+  Y+ LID L   GI PFVT+  +D+PQ +E++YG +LS    +DF  +A+  FK +G +VK+W T NEP +     Y +G   P  CS P+       G+C  G S  E ++ +HNL+ +HA AV+ +R + +K +GG IGI
Sbjct:  133 VSKSGVQFYHDLIDELKRNGIIPFVTVFHWDTPQTLENEYGGFLSAHIVKDFREYAEFVFKEYGGKVKHWITFNEPWVFAHAGYDVGKKAPGRCS-PYAKDETVKGDCLGGRSGYEAYLVSHNLLNAHAEAVEAFR-QCEKCKGGKIGI 279          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LPH_RAT (Lactase-phlorizin hydrolase OS=Rattus norvegicus GN=Lct PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 4.659e-24
Identity = 59/146 (40.41%), Postives = 81/146 (55.48%), Query Frame = 3
Query:   30 VNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNT 467
            +N +G+++YN+LID+L+   I P VTL  +D PQ ++D  G W +P   E F  +AD CFK+FGDRVK+W T NEP   V L Y  G  PP          S       P+  +H +I +HA     Y  KY+ +Q G I + LNT
Sbjct:  994 INKQGVDYYNRLIDSLVDNNIFPMVTLFHWDLPQALQD-IGGWENPSLIELFDSYADYCFKTFGDRVKFWMTFNEPWCHVVLGYSSGIFPP----------SVQEPGWLPYKVSHIVIKAHARVYHTYDEKYRSEQKGVISLSLNT 1128          

HSP 2 Score: 101.679 bits (252), Expect = 1.657e-21
Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = 3
Query:   30 VNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNT 467
            +N  G+++Y + IDALL  GI P VT+  +D PQ ++D  G W +    + F  +AD+ F+  GDRVK+W T+NEP +     Y  G   P    +P            P+IA HNLI +HA A  +Y   Y+  QGG+I I +++
Sbjct: 1466 INEAGLSYYVRFIDALLAAGITPQVTIYHWDLPQALQD-VGGWENETIVQRFKEYADVLFQRLGDRVKFWITLNEPFVIAAQGYGTGVSAPGISFRP---------GTAPYIAGHNLIKAHAEAWHLYNDVYRARQGGTISITISS 1601          

HSP 3 Score: 92.4337 bits (228), Expect = 1.005e-18
Identity = 55/145 (37.93%), Postives = 78/145 (53.79%), Query Frame = 3
Query:   33 NSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNT 467
            N +G+ +YNKLID LL   I+P  TL  +D PQ ++++ G W +    E F  +A  CF +FGDRVK W T +EP +     Y  G H PA  S P G  S        F  AH ++ +HA    +Y   ++  Q G +GI+LN+
Sbjct:  472 NRQGVAYYNKLIDRLLDSHIEPMATLFHWDLPQALQEQ-GGWQNESVVEAFLDYAAFCFSTFGDRVKLWVTFHEPWVMSYAGYGTGQHAPA-ISDP-GMAS--------FKVAHLILKAHARTWHLYDLHHRLQQQGRVGIVLNS 605          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: GBA3_CAVPO (Cytosolic beta-glucosidase OS=Cavia porcellus GN=Gba3 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.771e-23
Identity = 57/144 (39.58%), Postives = 81/144 (56.25%), Query Frame = 3
Query:   30 VNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIIL 461
            +N +G+++YNK+ID LL  G+ P VTL  FD PQ +ED+ G WLS    E F  +A  CF +FG+RV+ W TINEPN+   + Y LG   P       G           + AAHN+I +HA A   Y + +++ Q G + + L
Sbjct:   92 INQKGVDYYNKIIDDLLTNGVTPVVTLYHFDLPQALEDQ-GGWLSEAIIEVFDKYAQFCFSTFGNRVRQWITINEPNVLCAMGYDLGFFAPGVSQIGTGG----------YQAAHNMIKAHARAWHSYDSLFREKQKGMVSLSL 224          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: BGL18_ARATH (Beta-glucosidase 18 OS=Arabidopsis thaliana GN=BGLU18 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 6.728e-23
Identity = 58/147 (39.46%), Postives = 84/147 (57.14%), Query Frame = 3
Query:   30 VNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPF-----GNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGI 455
            ++  G+  Y+ LID LL   I P VT+  +D+PQ++ED+YG +LS    +DF  +A+  F  +G +VK+W T NEP +     Y  G   P  CS P+      +C  G S  E +  +HNL+LSHA AVD +R   ++  GG IGI
Sbjct:  133 ISKVGVQFYHDLIDELLKNNIIPLVTVFHWDTPQDLEDEYGGFLSGRIVQDFTEYANFTFHEYGHKVKHWITFNEPWVFSRAGYDNGKKAPGRCS-PYIPGYGQHCQDGRSGYEAYQVSHNLLLSHAYAVDAFR-NCKQCAGGKIGI 277          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LCTL_MOUSE (Lactase-like protein OS=Mus musculus GN=Lctl PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.148e-22
Identity = 56/145 (38.62%), Postives = 75/145 (51.72%), Query Frame = 3
Query:   30 VNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILN 464
            VN  GI  Y+  IDALL   I P VTL  +D PQ ++  YG W +      F  +AD+CF+ FGDRVK+W T ++P   V   Y  G H P    Q  G           ++AAH++I +HA A   Y   ++  Q G +GI LN
Sbjct:  126 VNKRGIKFYSDFIDALLKSNITPVVTLHHWDLPQMLQVAYGGWQNVSMTRYFSDYADLCFEVFGDRVKHWLTFSDPRTMVEKGYETGLHAPGLRLQGTG----------LYVAAHHIIKAHAQAWHSYNNTWRSKQHGLVGISLN 260          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LPH_RABIT (Lactase-phlorizin hydrolase OS=Oryctolagus cuniculus GN=LCT PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.958e-22
Identity = 56/144 (38.89%), Postives = 78/144 (54.17%), Query Frame = 3
Query:   30 VNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIIL 461
            +NS G+++YN+LID LL   I P VTL  +D PQ ++D  G W +P   + F  +AD CF++FGDRVK+W T NEP      SY  G  PP          +  +    P+  +H LI +HA     Y  KY++ Q G I + L
Sbjct:  990 INSHGVDYYNRLIDGLLASDIFPMVTLFHWDLPQALQD-IGGWENPSLIDLFDSYADYCFQTFGDRVKFWITFNEPTYYSWWSYGSGTFPP----------NVNDPGWAPYRISHALIKAHARVYHTYDEKYRQSQNGVISLSL 1122          

HSP 2 Score: 102.449 bits (254), Expect = 9.715e-22
Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = 3
Query:   30 VNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNT 467
            +N  G+N+Y +LIDALL   I+P VT+  FD PQ ++D  G W +    + F  +AD+ F+  GD+VK+W T+NEP +     Y  G + P    +P            P+I  HNLI +HA A  +Y   Y+  QGG I I +++
Sbjct: 1463 INEAGLNYYVRLIDALLAANIKPQVTMYHFDLPQALQD-VGGWENETIVQRFKEYADVLFQRLGDKVKFWITLNEPFVVAYHGYGTGLYAPGIYFRP---------GTAPYIVGHNLIKAHAEAWHLYNDVYRASQGGVISITISS 1598          

HSP 3 Score: 87.8113 bits (216), Expect = 2.476e-17
Identity = 52/143 (36.36%), Postives = 77/143 (53.85%), Query Frame = 3
Query:   39 EGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNT 467
            +G+ +YNKLID+LL   I+P  TL  +D PQ ++D+ G W +    + F  +A  CF +FG+RVK W T +EP +     Y  G H P   S P G  S        F  AH ++ +HA     Y + ++  Q G +GI+LN+
Sbjct:  470 QGVAYYNKLIDSLLDSHIEPMATLFHWDLPQALQDE-GGWQNESVVDAFVDYAAFCFSAFGNRVKLWVTFHEPWVMSYAGYGTGQHAPG-ISDP-GIAS--------FQVAHLVLKAHARTWHHYNSHHRPQQQGRVGIVLNS 601          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LCTL_HUMAN (Lactase-like protein OS=Homo sapiens GN=LCTL PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 3.339e-22
Identity = 56/145 (38.62%), Postives = 78/145 (53.79%), Query Frame = 3
Query:   30 VNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILN 464
            VN +GI  Y+ LIDALL   I P VTL  +D PQ ++ KYG W +      F  +A++CF++FGDRVK+W T ++P       Y  G H P    +  G           + AAH++I +HA A   Y T ++  Q G +GI LN
Sbjct:  127 VNKKGIEFYSDLIDALLSSNITPIVTLHHWDLPQLLQVKYGGWQNVSMANYFRDYANLCFEAFGDRVKHWITFSDPRAMAEKGYETGHHAPGLKLRGTG----------LYKAAHHIIKAHAKAWHSYNTTWRSKQQGLVGISLN 261          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: KLOT_MACFA (Klotho OS=Macaca fascicularis GN=KL PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.361e-22
Identity = 50/145 (34.48%), Postives = 78/145 (53.79%), Query Frame = 3
Query:   33 NSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNT 467
            N EG+ +Y +L++ L   G+QP VTL  +D PQ ++D YG W +    + F  +A++CF+ FG +VKYW TI+ P +     Y  G   P     P             ++ AHNL+L+HA    +Y T ++  QGG + I L++
Sbjct:  168 NREGLRYYRRLLERLRELGVQPVVTLYHWDLPQRLQDAYGGWANRALADHFRDYAELCFRHFGGQVKYWITIDNPYVVAWHGYATGRLAPGIRGSP----------RLGYLVAHNLLLAHAKVWHLYNTSFRPTQGGQVSIALSS 302          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: KLOT_HUMAN (Klotho OS=Homo sapiens GN=KL PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 4.361e-22
Identity = 50/145 (34.48%), Postives = 78/145 (53.79%), Query Frame = 3
Query:   33 NSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNT 467
            N EG+ +Y +L++ L   G+QP VTL  +D PQ ++D YG W +    + F  +A++CF+ FG +VKYW TI+ P +     Y  G   P     P             ++ AHNL+L+HA    +Y T ++  QGG + I L++
Sbjct:  166 NREGLRYYRRLLERLRELGVQPVVTLYHWDLPQRLQDAYGGWANRALADHFRDYAELCFRHFGGQVKYWITIDNPYVVAWHGYATGRLAPGIRGSP----------RLGYLVAHNLLLAHAKVWHLYNTSFRPTQGGQVSIALSS 300          
BLAST of CX309298 vs. ExPASy Swiss-Prot
Match: LPH_HUMAN (Lactase-phlorizin hydrolase OS=Homo sapiens GN=LCT PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 5.696e-22
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 3
Query:   30 VNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNT 467
            +NS G+++YN+LI+ L+   I P VTL  +D PQ ++D  G W +P   + F  +AD CF++FGDRVK+W T NEP     L Y  G  PP      +           P+  AH +I +HA     Y  KY+++Q G I + L+T
Sbjct:  992 INSHGVDYYNRLINGLVASNIFPMVTLFHWDLPQALQD-IGGWENPALIDLFDSYADFCFQTFGDRVKFWMTFNEPMYLAWLGYGSGEFPPGVKDPGWA----------PYRIAHAVIKAHARVYHTYDEKYRQEQKGVISLSLST 1126          

HSP 2 Score: 100.523 bits (249), Expect = 3.692e-21
Identity = 53/146 (36.30%), Postives = 79/146 (54.11%), Query Frame = 3
Query:   30 VNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNT 467
            +N  G+N+Y +LID LL   IQP VT+  +D PQ ++D  G W +    + F  +AD+ F+  GD+VK+W T+NEP +     Y  G   P   ++P            P+I  HNLI +HA A  +Y   Y+  QGG I I +++
Sbjct: 1465 INEAGLNYYVRLIDTLLAASIQPQVTIYHWDLPQTLQD-VGGWENETIVQRFKEYADVLFQRLGDKVKFWITLNEPFVIAYQGYGYGTAAPGVSNRP---------GTAPYIVGHNLIKAHAEAWHLYNDVYRASQGGVISITISS 1600          

HSP 3 Score: 91.6633 bits (226), Expect = 1.715e-18
Identity = 54/142 (38.03%), Postives = 76/142 (53.52%), Query Frame = 3
Query:   42 GINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNT 467
            G+ +YNKLID L   GI+P  TL  +D PQ ++D +G W +    + F  +A  CF +FGDRVK W T +EP +     Y  G HPP   S P G  S        F  AH ++ +HA     Y + ++  Q G +GI+LN+
Sbjct:  473 GVAYYNKLIDRLQDAGIEPMATLFHWDLPQALQD-HGGWQNESVVDAFLDYAAFCFSTFGDRVKLWVTFHEPWVMSYAGYGTGQHPPG-ISDP-GVAS--------FKVAHLVLKAHARTWHHYNSHHRPQQQGHVGIVLNS 603          
The following BLAST results are available for this feature:
BLAST of CX309298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
BGL24_ARATH1.226e-2439.60Beta-glucosidase 24 OS=Arabidopsis thaliana GN=BGL... [more]
LPH_RAT4.659e-2440.41Lactase-phlorizin hydrolase OS=Rattus norvegicus G... [more]
GBA3_CAVPO1.771e-2339.58Cytosolic beta-glucosidase OS=Cavia porcellus GN=G... [more]
BGL18_ARATH6.728e-2339.46Beta-glucosidase 18 OS=Arabidopsis thaliana GN=BGL... [more]
LCTL_MOUSE1.148e-2238.62Lactase-like protein OS=Mus musculus GN=Lctl PE=2 ... [more]
LPH_RABIT1.958e-2238.89Lactase-phlorizin hydrolase OS=Oryctolagus cunicul... [more]
LCTL_HUMAN3.339e-2238.62Lactase-like protein OS=Homo sapiens GN=LCTL PE=1 ... [more]
KLOT_MACFA4.361e-2234.48Klotho OS=Macaca fascicularis GN=KL PE=2 SV=1[more]
KLOT_HUMAN4.361e-2234.48Klotho OS=Homo sapiens GN=KL PE=1 SV=2[more]
LPH_HUMAN5.696e-2237.67Lactase-phlorizin hydrolase OS=Homo sapiens GN=LCT... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC20002C09SK OF2 Citrus clementina cDNA clone C20002C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309298 ID=CX309298; Name=CX309298; organism=Citrus clementina; type=EST; length=467bp
CNNNNNNNNNNNNNNNNNNNNNNNGGGACGTCAATTCAGAGGGTATTAAC
CACTACAACAAGCTCATTGATGCCCTCTTACTGAAAGGGATCCAGCCATT
TGTGACACTGACTCAATTTGATAGTCCTCAAGAAATTGAAGACAAATACG
GAGCCTGGCTAAGCCCTGAATCACAGGAGGATTTTGGATATTTTGCAGAC
ATTTGTTTTAAATCTTTCGGAGACCGAGTGAAATACTGGTTCACCATCAA
TGAGCCAAATATGCAGGTTACCCTTAGTTATCGTTTAGGCTGCCATCCCC
CAGCTCATTGCTCGCAGCCATTTGGAAATTGCAGTCAGGGCAATTCAGAG
GAGGAGCCTTTTATAGCAGCTCACAATCTCATCTTATCGCATGCAACTGC
AGTTGATATATACCGAACCAAATACCAGAAAGATCAAGGAGGCAGCATTG
GCATTATCTTAAACACA
back to top