DY256686

Overview
NameDY256686
Unique NameDY256686
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1054
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256686 vs. ExPASy Swiss-Prot
Match: EMC3_YEAST (ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae GN=AIM27 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.287e-23
Identity = 51/127 (40.16%), Postives = 71/127 (55.91%), Query Frame = 1
Query:  433 IPQTLTFAWVNFFFSGFVAANIPFPLTQRFRSLLQNGIDLIPVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMMQMSGFG----------FDPSKSLGAEKDSLDIIQHEWALPKFEQR 783
            IPQT+   WVN FF+GF+   +PFPLT +F+ +LQ GI    +DV +VSS SWYF+++ GL  +++LI       +D Q M   +G G              K++ A  + L IIQHE  L   EQR
Sbjct:  127 IPQTIIMWWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQDLDVRWVSSISWYFISVLGLNPVYNLI-----GLND-QDMGIQAGIGGPQGPQGPPQSQVDKAMHAMANDLTIIQHETCLDNVEQR 247          

HSP 2 Score: 45.4394 bits (106), Expect = 1.287e-23
Identity = 32/117 (27.35%), Postives = 62/117 (52.99%), Query Frame = 3
Query:   87 LVLDAAIRDWVLIPLSVVMVLIPILRYFVSKLMRSSLVPD--PKI-VKERRLIVRARNLRAGANFIAPKSFRARKVYF---CTQENGLLQMPK--GRAQNAQAQMFSDPNMAMDMMN 413
            ++LD  ++ WVL+P+S+VMVL  +L+ ++  L+  S   +  P++ + E + +  A+ L      ++  +F A+K +     T+E  L +  +  G         F+DP+M+  MMN
Sbjct:    1 MLLDDQLKYWVLLPISIVMVLTGVLKQYIMTLITGSSANEAQPRVKLTEWQYLQWAQLLIGNGGNLSSDAFAAKKEFLVKDLTEERHLAKAKQQDGSQAGEVPNPFNDPSMSNAMMN 117          
BLAST of DY256686 vs. ExPASy Swiss-Prot
Match: EMC3_YEAS7 (ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae (strain YJM789) GN=AIM27 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.287e-23
Identity = 51/127 (40.16%), Postives = 71/127 (55.91%), Query Frame = 1
Query:  433 IPQTLTFAWVNFFFSGFVAANIPFPLTQRFRSLLQNGIDLIPVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMMQMSGFG----------FDPSKSLGAEKDSLDIIQHEWALPKFEQR 783
            IPQT+   WVN FF+GF+   +PFPLT +F+ +LQ GI    +DV +VSS SWYF+++ GL  +++LI       +D Q M   +G G              K++ A  + L IIQHE  L   EQR
Sbjct:  127 IPQTIIMWWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQDLDVRWVSSISWYFISVLGLNPVYNLI-----GLND-QDMGIQAGIGGPQGPQGPPQSQVDKAMHAMANDLTIIQHETCLDNVEQR 247          

HSP 2 Score: 45.4394 bits (106), Expect = 1.287e-23
Identity = 32/117 (27.35%), Postives = 62/117 (52.99%), Query Frame = 3
Query:   87 LVLDAAIRDWVLIPLSVVMVLIPILRYFVSKLMRSSLVPD--PKI-VKERRLIVRARNLRAGANFIAPKSFRARKVYF---CTQENGLLQMPK--GRAQNAQAQMFSDPNMAMDMMN 413
            ++LD  ++ WVL+P+S+VMVL  +L+ ++  L+  S   +  P++ + E + +  A+ L      ++  +F A+K +     T+E  L +  +  G         F+DP+M+  MMN
Sbjct:    1 MLLDDQLKYWVLLPISIVMVLTGVLKQYIMTLITGSSANEAQPRVKLTEWQYLQWAQLLIGNGGNLSSDAFAAKKEFLVKDLTEERHLAKAKQQDGSQAGEVPNPFNDPSMSNAMMN 117          
The following BLAST results are available for this feature:
BLAST of DY256686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
EMC3_YEAST1.287e-2340.16ER membrane protein complex subunit 3 OS=Saccharom... [more]
EMC3_YEAS71.287e-2340.16ER membrane protein complex subunit 3 OS=Saccharom... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1CB12ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256686 ID=DY256686; Name=DY256686; organism=Citrus clementina; type=EST; length=1054bp
GCGGGGGACATACACAAAAACGAAATAAATCGAAATCTAGCACCCACAGG
CACAGGCGCAGGTACTGATCATCAATGGCGGAAAATCTGGTGCTTGACGC
GGCTATCAGAGACTGGGTGCTGATACCGCTGTCGGTTGTGATGGTCCTCA
TCCCAATTCTCCGTTACTTCGTCTCTAAACTTATGCGCTCCTCTCTTGTG
CCCGATCCTAAAATCGTTAAAGAACGACGATTGATTGTTAGGGCGCGAAA
TTTGCGTGCTGGCGCTAATTTTATCGCTCCAAAGTCTTTTCGCGCTCGCA
AAGTTTATTTCTGTACCCAGGAAAATGGATTGTTGCAAATGCCAAAGGGT
CGGGCACAGAATGCGCAAGCGCAAATGTTTTCCGATCCTAACATGGCAAT
GGACATGATGAATAAAAATCTTTCATATGATCATACCCCAGACCCTTACT
TTTGCTTGGGTCAACTTTTTCTTCTCGGGGTTTGTTGCAGCCAATATACC
TTTCCCACTGACTCAAAGGTTCAGGTCATTGTTACAAAATGGGATTGACT
TGATCCCTGTTGATGTAAGCTATGTCAGTAGTCGTTCATGGTACTTCCTC
AATTTGTTTGGACTGAGGGGTTTATTTAGCCTCATTCTGGGGGAAGAAAA
TGCTACTGATGATACTCAGCGTATGATGCAAATGAGTGGGTTTGGCTTTG
ACCCAAGCAAGAGCTTGGGTGCTGAGAAAGACAGTCTGGACATAATTCAG
CATGAATGGGCCTTACCAAAATTTGAGCAGCGTGCTGAAACAGTATTGAA
AGATCTTGTCCGTTGAACAATGGTGATCTGTTGTTATTTGTTTGATTATA
GCATCGGGAATGGTTCCTTGGTGATTTTCATCCATTTGGTGGACCTCTGG
GGACGGCTTTGACGCCAGCATGACTTTAAATCTTCTATAAACCACTGTTT
TATTCCCAGTTTTATCTTGGTAGGTAAGCATCATTATTTGAGAAATTTTT
TGGTTTTACTAATTCAACCTGCCTTTGGTAAGTTGGTGGGAGTATTTTAT
GTTT
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