DY256759

Overview
NameDY256759
Unique NameDY256759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT2_SOLTU (Actin-46 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.459e-25
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 179
            NIVLSGGSTMFPGIADRMSKEI ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  278 NIVLSGGSTMFPGIADRMSKEIQALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT4_SOLTU (Actin-65 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.607e-25
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ 176
            NIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ
Sbjct:  279 NIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ 336          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT1_SOLTU (Actin-42 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.607e-25
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 179
            NIVLSGG+TMFPGIADRMSKEITALAP SMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  274 NIVLSGGTTMFPGIADRMSKEITALAPCSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 332          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ARPM1_MOUSE (Actin-related protein M1 homolog OS=Mus musculus GN=Arpm1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.935e-25
Identity = 49/80 (61.25%), Postives = 66/80 (82.50%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            NI+LSGGST FPG+  R+ K++  LAP++  ++V+APPERK SVW+GGSILASLS FQ MWI+  E++E GP+IVH++CF
Sbjct:  290 NIILSGGSTSFPGLDKRLIKDVAKLAPANTAVQVIAPPERKISVWMGGSILASLSAFQDMWITAAEFEEVGPNIVHQRCF 369          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT_CALFI (Actin (Fragment) OS=Calanus finmarchicus PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.298e-24
Identity = 52/61 (85.25%), Postives = 59/61 (96.72%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMW 185
            N V+SGG+TM+PGIADRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMW
Sbjct:  218 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMW 278          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACTY_DICDI (Centractin OS=Dictyostelium discoideum GN=arpA PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.695e-24
Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 242
            NI+L GGST+F G  DR+  E+  LAP  +KIK+ APPERKYS W+GGSILASLSTF+ +W+++ EY+E G S++HRK F
Sbjct:  304 NIILGGGSTLFQGFGDRLLNEVKKLAPKDIKIKITAPPERKYSAWMGGSILASLSTFKDLWVTRQEYEEDGCSVIHRKIF 383          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT9_SOLTU (Actin-82 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.213e-24
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 179
            NIVLSGG+TMF GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  278 NIVLSGGTTMFNGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT2_TOBAC (Actin-53 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.213e-24
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 179
            N+VLSGGSTMFPGI DRMSKEI+ALAP+SMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  278 NVVLSGGSTMFPGITDRMSKEISALAPNSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT_EUPCR (Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.891e-24
Identity = 50/79 (63.29%), Postives = 64/79 (81.01%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 239
            NI+LSGG+TMFPG+ +R+ KE+  LAP +MK+KV+A P+RKY+VW GGS LA LSTF  MW++K +Y E G SIVHRKC
Sbjct:  300 NIILSGGTTMFPGLGERLYKEMKDLAPQTMKVKVIASPDRKYAVWRGGSTLAKLSTFAGMWVTKEDYAEFGESIVHRKC 378          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ACT4_SOLLC (Actin-105 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.931e-24
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 179
            N+VLSGGSTMFPGI DRMSKE TALAPSSMKIKVVAPPE KYSVWIGGSILASLSTFQQ
Sbjct:  278 NVVLSGGSTMFPGITDRMSKEFTALAPSSMKIKVVAPPESKYSVWIGGSILASLSTFQQ 336          
The following BLAST results are available for this feature:
BLAST of DY256759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
ACT2_SOLTU4.459e-2598.31Actin-46 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT4_SOLTU7.607e-2598.28Actin-65 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT1_SOLTU7.607e-2596.61Actin-42 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ARPM1_MOUSE9.935e-2561.25Actin-related protein M1 homolog OS=Mus musculus G... [more]
ACT_CALFI1.298e-2485.25Actin (Fragment) OS=Calanus finmarchicus PE=2 SV=1[more]
ACTY_DICDI1.695e-2460.00Centractin OS=Dictyostelium discoideum GN=arpA PE=... [more]
ACT9_SOLTU2.213e-2496.61Actin-82 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT2_TOBAC2.213e-2493.22Actin-53 (Fragment) OS=Nicotiana tabacum PE=3 SV=1[more]
ACT_EUPCR2.891e-2463.29Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1[more]
ACT4_SOLLC4.931e-2493.22Actin-105 (Fragment) OS=Solanum lycopersicum PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2AB02ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256759 ID=DY256759; Name=DY256759; organism=Citrus clementina; type=EST; length=690bp
GTAACATTGTTCTCAGTGGGGGTTCAACTATGTTCCCCGGTATTGCCGAC
CGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGAAGATCAA
GGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTGGATTGGAGGATCAA
TCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGGGCGAG
TATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCTAAGTTCT
TTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTTTTTGT
GTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTAAGGTTG
GGGCCATTGAAGGAGGCATATCTCGATATTGATGTTATTATACAAGCTTC
TTACAGCGTTTGAGGGGGGCTTATTTCTGTACTCAACCGTCTTCCTTGCC
TTGCATTCATCTGGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCCTTTTT
TTTTTTTAAAGTAGGATGTTTGTAGCTGGAGATGAAGAGTGGTTGTGATG
CTTTTCTATTTCATTTTCTAAATTTTCATATTTGAAGGTTTTTTTTCTCC
CCCTCTCAAAAGGAACATTAATGTTAATAGCTATTGTATGAGAAAACTTT
AATTAGTGTCAGCTTGCAGTCATAAATTTGGTTATTAAAA
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