DY256759

Overview
NameDY256759
Unique NameDY256759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: CT134_MOUSE (Putative uncharacterized actin family protein C20orf134 homolog OS=Mus musculus PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 3
Query:    6 IVLSGGSTMFPGIADRMSKEITALAPS----SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIV 227
            +VL+GGST+FPG  +RM+ E+ A        +++  +VA P R  +VW GGS++ASL++FQ  W+++  Y E GP +V
Sbjct:  264 VVLAGGSTLFPGFVERMNLELEAQCRRHGYPALQPCLVAHPGRDTAVWTGGSMMASLNSFQCRWMTRAMYQEHGPLLV 341          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: CT134_HUMAN (Putative uncharacterized actin family protein C20orf134 OS=Homo sapiens GN=C20orf134 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 32/79 (40.51%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    6 IVLSGGSTMFPGIADRMSKEITALAP----SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVH 230
            +VL+GGST+FPG A+R+ KE+ A       ++++  +VA   R  +VW GGS++ASL +FQ+ WI++  Y E G  +++
Sbjct:  163 VVLAGGSTLFPGFAERLDKELEAQCRRHGYAALRPHLVAKHGRGMAVWTGGSMVASLHSFQRRWITRAMYQECGSRLLY 241          
BLAST of DY256759 vs. ExPASy Swiss-Prot
Match: ARP42_SCHPO (SWI/SNF and RSC complexes subunit arp42 OS=Schizosaccharomyces pombe GN=arp42 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 3
Query:    3 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKV---VAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPS---IVHRKC 239
            NIV++GG+++ PG+++R+  E+  LA  S +I V           +VW GGSILASL  FQ +W+SK EYDE G      V ++C
Sbjct:  346 NIVVTGGTSLIPGLSERLQAEVQRLATGS-RINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVGVDRALFVEKRC 429          
The following BLAST results are available for this feature:
BLAST of DY256759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
CT134_MOUSE8.165e-1142.31Putative uncharacterized actin family protein C20o... [more]
CT134_HUMAN8.165e-1140.51Putative uncharacterized actin family protein C20o... [more]
ARP42_SCHPO8.165e-1142.35SWI/SNF and RSC complexes subunit arp42 OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2AB02ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256759 ID=DY256759; Name=DY256759; organism=Citrus clementina; type=EST; length=690bp
GTAACATTGTTCTCAGTGGGGGTTCAACTATGTTCCCCGGTATTGCCGAC
CGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGAAGATCAA
GGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTGGATTGGAGGATCAA
TCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGGGCGAG
TATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCTAAGTTCT
TTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTTTTTGT
GTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTAAGGTTG
GGGCCATTGAAGGAGGCATATCTCGATATTGATGTTATTATACAAGCTTC
TTACAGCGTTTGAGGGGGGCTTATTTCTGTACTCAACCGTCTTCCTTGCC
TTGCATTCATCTGGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCCTTTTT
TTTTTTTAAAGTAGGATGTTTGTAGCTGGAGATGAAGAGTGGTTGTGATG
CTTTTCTATTTCATTTTCTAAATTTTCATATTTGAAGGTTTTTTTTCTCC
CCCTCTCAAAAGGAACATTAATGTTAATAGCTATTGTATGAGAAAACTTT
AATTAGTGTCAGCTTGCAGTCATAAATTTGGTTATTAAAA
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