DY256813

Overview
NameDY256813
Unique NameDY256813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length953
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256813_ssr276 microsatellite DY256813_ssr276:276..287. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig996 contig Ccv1_Contig996:1..953. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_METTE (Chaperone protein dnaJ OS=Methanosarcina thermophila GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.064e-14
Identity = 62/164 (37.80%), Postives = 84/164 (51.22%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD----AGLYDPLEEED----EDFYGFMQEMVSMMNNVKDEG--------DSFEDLQRTFVEMVDGMSFDFNYDPTDAQKARVNTSKGKAAKRGTS--RC 746
            YY ILG+ +DA+  DI+ +Y KLA+K+HPDR+ K PG    A+ +F++I EAY+VLSD  KR+ YD    AG+      ED     DF GF  ++  M       G        D   DL  TF E   G+  D +   T+    R +   G  A+ GTS  RC
Sbjct:    7 YYEILGLSRDATPEDIKKSYRKLALKYHPDRN-KEPG----AEEKFKEISEAYAVLSDPEKRAQYDRFGHAGINGQYTAEDIFRGADFSGF-GDIFEMFFGGSRRGPRGPRRGSDLQYDLYITFEEAAFGVRKDIDVPRTE----RCSNCSGTGARPGTSPKRC 160          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNJB8_MOUSE (DnaJ homolog subfamily B member 8 OS=Mus musculus GN=Dnajb8 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.520e-14
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD 506
            YY +LG++  AS  DI+ AY KLA++WHPD   KNP    EA+++F+Q+ EAY VLSD  KRS+YD
Sbjct:    4 YYEVLGVQSSASPEDIKKAYRKLALRWHPD---KNPDNKEEAEKKFKQVSEAYEVLSDSKKRSVYD 66          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNJB6_PONAB (DnaJ homolog subfamily B member 6 OS=Pongo abelii GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.520e-14
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD 506
            YY +LG+++ AS  DI+ AY KLA+KWHPD   KNP    EA+R+F+Q+ EAY VLSD  KR +YD
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIYD 66          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNJB6_MACFA (DnaJ homolog subfamily B member 6 OS=Macaca fascicularis GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.520e-14
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD 506
            YY +LG+++ AS  DI+ AY KLA+KWHPD   KNP    EA+R+F+Q+ EAY VLSD  KR +YD
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIYD 66          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNJB6_HUMAN (DnaJ homolog subfamily B member 6 OS=Homo sapiens GN=DNAJB6 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.520e-14
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD 506
            YY +LG+++ AS  DI+ AY KLA+KWHPD   KNP    EA+R+F+Q+ EAY VLSD  KR +YD
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIYD 66          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_THEP1 (Chaperone protein dnaJ OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.520e-14
Identity = 49/142 (34.51%), Postives = 75/142 (52.82%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFMQEMVSMMNNVKDEGDSFEDLQRTFVEMVDGMSFDFNYDPTDAQKARVNTSKGKAAKRG 734
            YY ILG+ +DA+  +I+ AY +L  +WHPDR  +N     EA++RF++IQEAY VLSD  KR+MYD              +G++ E  +      + G  FED+ + F  + +   FD  +     Q+      K + A+RG
Sbjct:    8 YYEILGVPRDATQEEIKRAYKRLVKEWHPDRHPEN---RKEAEQRFKEIQEAYEVLSDPQKRAMYDR-------------FGYVGEQPTYQET--ESGGFFEDIFKEFENIFNRDIFDVFFGERPGQE-----EKREYARRG 126          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNJB7_HUMAN (DnaJ homolog subfamily B member 7 OS=Homo sapiens GN=DNAJB7 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.597e-14
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-----EDEDFYGF 557
            YY +LG+++ AS  DI+ AYHK+A+KWHPD   KNP    EA+R+F+++ EAY VLS++ KR +YD    + L       +DE  YGF
Sbjct:    4 YYEVLGLQRYASPEDIKKAYHKVALKWHPD---KNPENKEEAERKFKEVAEAYEVLSNDEKRDIYDKYGTEGLNGGGSHFDDECEYGF 88          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_THESQ (Chaperone protein dnaJ OS=Thermotoga sp. (strain RQ2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.597e-14
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFMQEMVSMMNNVKDEGDSFEDLQRTFVEMVDGMSFDFNYDPTDAQKAR 698
            YY ILG+ +DA+  +I+ AY +L  +WHPDR  +N     EA++RF++IQEAY VLSD  KR+MYD              +G++ E  +      + G  F+D+ R F  + +   FD  +     Q+ R
Sbjct:    8 YYEILGVPRDATQEEIKRAYKRLVKEWHPDRHPEN---RKEAEQRFKEIQEAYEVLSDPQKRAMYDR-------------FGYVGEQPTYQET--ESGGFFDDIFREFENIFNRDIFDVFFGERPHQEER 119          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_THENN (Chaperone protein dnaJ OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.597e-14
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFMQEMVSMMNNVKDEGDSFEDLQRTFVEMVDGMSFDFNYDPTDAQKAR 698
            YY ILG+ ++A+  +IR AY +L  +WHPDR  +N     EA++RF++IQEAY VLSD  KR+MYD              +G++ E   +    +  G  FED+ R F  + +   FD  +     ++ R
Sbjct:    8 YYEILGVPRNATQEEIRKAYKRLVKEWHPDRHPEN---RKEAEQRFKEIQEAYEVLSDPQKRAMYDR-------------FGYVGEQ-PVYQEAETGGSFFEDVFREFENIFNRDIFDVFFGEESGRRER 120          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_THEMA (Chaperone protein dnaJ OS=Thermotoga maritima GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.597e-14
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFMQEMVSMMNNVKDEGDSFEDLQRTFVEMVDGMSFDFNYDPTDAQKAR 698
            YY ILG+ +DA+  +I+ AY +L  +WHPDR  +N     EA++RF++IQEAY VLSD  KR+MYD              +G++ E  +      + G  F+D+ R F  + +   FD  +     Q+ R
Sbjct:    8 YYEILGVPRDATQEEIKRAYKRLVKEWHPDRHPEN---RKEAEQRFKEIQEAYEVLSDPQKRAMYDR-------------FGYVGEQPTYQET--ESGGFFDDIFRDFENIFNRDIFDVFFGERPHQEER 119          
The following BLAST results are available for this feature:
BLAST of DY256813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
DNAJ_METTE2.064e-1437.80Chaperone protein dnaJ OS=Methanosarcina thermophi... [more]
DNJB8_MOUSE3.520e-1454.55DnaJ homolog subfamily B member 8 OS=Mus musculus ... [more]
DNJB6_PONAB3.520e-1456.06DnaJ homolog subfamily B member 6 OS=Pongo abelii ... [more]
DNJB6_MACFA3.520e-1456.06DnaJ homolog subfamily B member 6 OS=Macaca fascic... [more]
DNJB6_HUMAN3.520e-1456.06DnaJ homolog subfamily B member 6 OS=Homo sapiens ... [more]
DNAJ_THEP13.520e-1434.51Chaperone protein dnaJ OS=Thermotoga petrophila (s... [more]
DNJB7_HUMAN4.597e-1446.59DnaJ homolog subfamily B member 7 OS=Homo sapiens ... [more]
DNAJ_THESQ4.597e-1435.38Chaperone protein dnaJ OS=Thermotoga sp. (strain R... [more]
DNAJ_THENN4.597e-1435.38Chaperone protein dnaJ OS=Thermotoga neapolitana (... [more]
DNAJ_THEMA4.597e-1435.38Chaperone protein dnaJ OS=Thermotoga maritima GN=d... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2BD04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256813 ID=DY256813; Name=DY256813; organism=Citrus clementina; type=EST; length=953bp
GCGGGGGTCTCTCTTCCCTTCATCACCCGTACAGTCGTCAATAATCCCCT
TTTAAGTCTCTAAACGCAACACATACCCAGGAGGTGAGAAGGATTAAAAA
AAAAAAAACAATTAAAAAAAAGGAGAAACCAAAAAATTCCTTTATTTTTC
TCTGCTTTATCAATCCTCCAAATGCTCTCTTCATAACAGTTTGTTTCCGT
TTCTTCATATGATTTTATCTTGACAAGCATATTACATCCTTATTGCTGTT
TTCTTTTTTGGTTGCTGTGATGGATGGAGGAGGAGGATCCAACGGCGGAT
CTTTGAGCTACTACGCGATTCTTGGGATTCGCAAGGACGCCTCCTTCTCT
GACATTCGCTCCGCTTATCACAAGCTCGCCATGAAATGGCATCCGGATAG
GAGTGCGAAGAACCCGGGAGTGGCCGGGGAAGCCAAACGCCGGTTTCAGC
AAATTCAAGAAGCTTACTCCGTCCTCTCGGATGAGAACAAGAGGTCAATG
TACGATGCTGGACTTTATGATCCCCTTGAGGAAGAAGATGAGGACTTCTA
TGGTTTTATGCAAGAGATGGTCTCCATGATGAATAATGTTAAAGACGAGG
GGGACAGTTTTGAGGACCTCCAAAGGACGTTCGTGGAAATGGTGGATGGG
ATGAGCTTCGACTTTAATTATGATCCTACGGATGCGCAAAAAGCACGTGT
CAACACATCAAAGGGTAAAGCGGCCAAGCGCGGTACTTCTCGTTGCTGAC
AATCGCTCTGGATCATCTCTGATCATTTCAGCTAATGATGATGTTGTTTA
TCAATTCCCCCCATTTTGTTCTAAATCTCAAATTAATCCCCATGTTGGGG
GTTGGTAGTTTTAAGAAATTTTTTTTTTTTTTTAATCCCCCGGGGGGGTA
GCATTTTGGACCTGAAAACTTTCCTTAAAAAATAAAATCCCTTTTTAAGG
TAA
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