DY256813

Overview
NameDY256813
Unique NameDY256813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length953
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256813_ssr276 microsatellite DY256813_ssr276:276..287. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig996 contig Ccv1_Contig996:1..953. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DJB11_MOUSE (DnaJ homolog subfamily B member 11 OS=Mus musculus GN=Dnajb11 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.115e-11
Identity = 45/127 (35.43%), Postives = 62/127 (48.82%), Query Frame = 3 
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDA----GLYDPLEEEDEDF-------YGFMQEMVSMM--NNVKDEGDSFEDLQRTFVEMVDG 650
            +Y ILG+ + AS  DI+ AY KLA++ HPDR+  +P    +A+ +FQ +  AY VLSD  KR  YD     GL D  +    D        +GFM          N+    D   DL+ T  E+  G
Sbjct:   26 FYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDP----QAQEKFQDLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHGDIFSHFFGDFGFMFGGTPRQQDRNIPRGSDIIVDLEVTLEEVYAG 148
[Close]
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DJB11_HUMAN (DnaJ homolog subfamily B member 11 OS=Homo sapiens GN=DNAJB11 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.115e-11
Identity = 45/127 (35.43%), Postives = 62/127 (48.82%), Query Frame = 3 
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDA----GLYDPLEEEDEDF-------YGFMQEMVSMM--NNVKDEGDSFEDLQRTFVEMVDG 650
            +Y ILG+ + AS  DI+ AY KLA++ HPDR+  +P    +A+ +FQ +  AY VLSD  KR  YD     GL D  +    D        +GFM          N+    D   DL+ T  E+  G
Sbjct:   26 FYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDP----QAQEKFQDLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHGDIFSHFFGDFGFMFGGTPRQQDRNIPRGSDIIVDLEVTLEEVYAG 148
The following BLAST results are available for this feature:
BLAST of DY256813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
DJB11_MOUSE8.115e-1135.43DnaJ homolog subfamily B member 11 OS=Mus musculus... [more]
DJB11_HUMAN8.115e-1135.43DnaJ homolog subfamily B member 11 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2BD04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256813 ID=DY256813; Name=DY256813; organism=Citrus clementina; type=EST; length=953bp
GCGGGGGTCTCTCTTCCCTTCATCACCCGTACAGTCGTCAATAATCCCCT
TTTAAGTCTCTAAACGCAACACATACCCAGGAGGTGAGAAGGATTAAAAA
AAAAAAAACAATTAAAAAAAAGGAGAAACCAAAAAATTCCTTTATTTTTC
TCTGCTTTATCAATCCTCCAAATGCTCTCTTCATAACAGTTTGTTTCCGT
TTCTTCATATGATTTTATCTTGACAAGCATATTACATCCTTATTGCTGTT
TTCTTTTTTGGTTGCTGTGATGGATGGAGGAGGAGGATCCAACGGCGGAT
CTTTGAGCTACTACGCGATTCTTGGGATTCGCAAGGACGCCTCCTTCTCT
GACATTCGCTCCGCTTATCACAAGCTCGCCATGAAATGGCATCCGGATAG
GAGTGCGAAGAACCCGGGAGTGGCCGGGGAAGCCAAACGCCGGTTTCAGC
AAATTCAAGAAGCTTACTCCGTCCTCTCGGATGAGAACAAGAGGTCAATG
TACGATGCTGGACTTTATGATCCCCTTGAGGAAGAAGATGAGGACTTCTA
TGGTTTTATGCAAGAGATGGTCTCCATGATGAATAATGTTAAAGACGAGG
GGGACAGTTTTGAGGACCTCCAAAGGACGTTCGTGGAAATGGTGGATGGG
ATGAGCTTCGACTTTAATTATGATCCTACGGATGCGCAAAAAGCACGTGT
CAACACATCAAAGGGTAAAGCGGCCAAGCGCGGTACTTCTCGTTGCTGAC
AATCGCTCTGGATCATCTCTGATCATTTCAGCTAATGATGATGTTGTTTA
TCAATTCCCCCCATTTTGTTCTAAATCTCAAATTAATCCCCATGTTGGGG
GTTGGTAGTTTTAAGAAATTTTTTTTTTTTTTTAATCCCCCGGGGGGGTA
GCATTTTGGACCTGAAAACTTTCCTTAAAAAATAAAATCCCTTTTTAAGG
TAA
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