DY256813

Overview
NameDY256813
Unique NameDY256813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length953
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256813_ssr276 microsatellite DY256813_ssr276:276..287. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig996 contig Ccv1_Contig996:1..953. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNJB8_HUMAN (DnaJ homolog subfamily B member 8 OS=Homo sapiens GN=DNAJB8 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.842e-14
Identity = 50/132 (37.88%), Postives = 73/132 (55.30%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD-AGLYDPLEEEDEDFYGFMQEMVSMMNNVKDEGDSF---EDLQRTFVEMVDGMSFDFNYDPTDAQK 692
            YY +LG++  AS  DI+ AY KLA++WHPD   KNP    EA+++F+ + EAY VLSD  KRS+YD AG          D +       +  ++  D G +F   ED+ R F   +D  SF+F   P ++ +
Sbjct:    4 YYEVLGVQASASPEDIKKAYRKLALRWHPD---KNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC---------DSWRAGGGASTPYHSPFDTGYTFRNPEDIFREFFGGLDPFSFEFWDSPFNSDR 123          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNJB6_MOUSE (DnaJ homolog subfamily B member 6 OS=Mus musculus GN=Dnajb6 PE=1 SV=4)

HSP 1 Score: 78.1814 bits (191), Expect = 7.842e-14
Identity = 51/128 (39.84%), Postives = 69/128 (53.91%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFMQEMVSMMNNVKDEGDSF---EDLQRTFVEMVDGMSFDFNYDPTD 683
            YY +LG+++ AS  DI+ AY K A+KWHPD   KNP    EA+R+F+Q+ EAY VLSD  KR +YD       +   E   G         ++  + G +F   +D+ R F    D  SFDF  DP D
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKQALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIYD-------KYGKEGLNGGGGGGGIHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFD 121          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNJ6B_XENLA (DnaJ homolog subfamily B member 6-B OS=Xenopus laevis GN=dnajb6-B PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.842e-14
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD 506
            YY +LG+++++S  DI+ AY +LA+KWHPD   KNP    EA+RRF+++ EAY VLSD  KR +YD
Sbjct:    4 YYDVLGVQRNSSPDDIKKAYRRLALKWHPD---KNPDNKEEAERRFKEVAEAYEVLSDSKKRDIYD 66          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNJB3_MACFU (DnaJ homolog subfamily B member 3 OS=Macaca fuscata fuscata GN=DNAJB3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.024e-13
Identity = 53/144 (36.81%), Postives = 74/144 (51.39%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGF-MQEMVSMMNNVKDEGDSFEDLQRTFVEMVDGMSFDFNYDPTD-----AQKARVNTSKGKA 722
            YY +LG++      DI+ AY KLA+KWHPD   KNP    EA+RRF+Q+ EAY VLSD  KR +YD   Y     E     G   ++    + + +D  + F    R F    D  SFDF  +P +      + +R + S+G A
Sbjct:    4 YYEVLGVQVQRFPEDIKKAYRKLALKWHPD---KNPDNKEEAERRFKQVAEAYEVLSDAKKRDVYDR--YGEAGAEGSCAVGRPFEDPFEYIFSFRDPAEVF----REFFGGQDPFSFDFFGNPLENILGSRRNSRGSRSRGSA 138          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNJB3_MOUSE (DnaJ homolog subfamily B member 3 OS=Mus musculus GN=Dnajb3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.747e-13
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD 506
            YY +LG+ + AS   IR AY KLA+KWHPD   KNP    EA+RRF+Q+ +AY VLSD  KR +YD
Sbjct:    4 YYEVLGVPRQASAEAIRKAYRKLALKWHPD---KNPEHKEEAERRFKQVAQAYEVLSDVRKREVYD 66          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCGE (Chaperone protein dnaJ OS=Mycoplasma genitalium GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.747e-13
Identity = 49/133 (36.84%), Postives = 75/133 (56.39%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDR-SAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFMQEMVSMMNNVKDEGDSFEDLQRTFVEMVDGMS-FDFNYDPTDAQKARV 701
            YY +LGI K+AS  DI+ A+ KLAM++HPDR  A+N     + + +F+++ EAY VLSDE KR +YD   ++ L        GF      + N+V  EG SF          +DG S FDF ++ +  ++ ++
Sbjct:    8 YYEVLGISKNASSQDIKRAFRKLAMQYHPDRHKAENETTQKQNEEKFKEVNEAYEVLSDEEKRKLYDQFGHEGLNASGFHEAGF--NPFDIFNSVFGEGFSFG---------MDGDSPFDFIFNRSKKRQQQI 129          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_THEM4 (Chaperone protein dnaJ OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.282e-13
Identity = 51/141 (36.17%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLY--DPLEEEDEDFYGFMQEMVSMMNNVKDEGDSFEDLQRTFVEMVDGMSFD--FNYDPTDAQKARVNTSKGK 719
            YY ILG+ ++A+  +IR AY KL  KWHPDR+ +N  +A E   +F++IQEAY VLSD  KR+MYD   Y  D        F GF                 FED+ + F + ++   F+  F    T ++K      KG+
Sbjct:    6 YYEILGVSRNATQEEIRQAYKKLIKKWHPDRNYENKKLAEE---KFKEIQEAYEVLSDPEKRAMYDKFGYVGDVPPNAGGGFRGF---------------GGFEDIFKDFGDFINNDIFNIFFGDQRTSSRKRTKTPRKGE 128          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_THEAB (Chaperone protein dnaJ OS=Thermosipho africanus (strain TCF52B) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.892e-13
Identity = 51/146 (34.93%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD----AGLYDPLEEEDEDFYGFMQEMVSMMNNVKDEGDSFEDLQRTFVEMVDGMSFDFNYDPTDAQKARVNTSKGKAAKRG 734
            YY ILG+ ++AS  +IR AY +L  KWHPDR+ +N     EA+ +F++IQEAY VLSD  KR+MYD     G   P       F GF                 FED+ + F + ++   F+  +      +   +  K + AKRG
Sbjct:    6 YYEILGVSRNASQEEIRQAYKQLIKKWHPDRNHQN---RKEAEEKFKEIQEAYEVLSDPEKRAMYDRFGYVGDVPPNAGSGGGFGGF------------GGFGGFEDIFKDFGDFINNDIFNIFF----GDQRTSSRQKQRRAKRG 132          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_METCA (Chaperone protein dnaJ OS=Methylococcus capsulatus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.083e-13
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD 506
            YY  LG+ ++AS SDI+ A+ +LAMK+HPDR+  NP    EA+ RF+ ++EAY VLSD  KRS YD
Sbjct:    6 YYETLGVPRNASDSDIKKAFRRLAMKYHPDRNKDNP----EAEERFKSVKEAYDVLSDPKKRSAYD 67          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNJB3_HUMAN (DnaJ homolog subfamily B member 3 OS=Homo sapiens GN=DNAJB3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.670e-13
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD 506
            YY +L + + AS   I+ AY KLA+KWHPD   KNP    EA+RRF+Q+ EAY VLSD  KR +YD
Sbjct:    4 YYEVLDVPRQASSEAIKKAYRKLALKWHPD---KNPENKEEAERRFKQVAEAYEVLSDAKKRDIYD 66          
The following BLAST results are available for this feature:
BLAST of DY256813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
DNJB8_HUMAN7.842e-1437.88DnaJ homolog subfamily B member 8 OS=Homo sapiens ... [more]
DNJB6_MOUSE7.842e-1439.84DnaJ homolog subfamily B member 6 OS=Mus musculus ... [more]
DNJ6B_XENLA7.842e-1453.03DnaJ homolog subfamily B member 6-B OS=Xenopus lae... [more]
DNJB3_MACFU1.024e-1336.81DnaJ homolog subfamily B member 3 OS=Macaca fuscat... [more]
DNJB3_MOUSE1.747e-1356.06DnaJ homolog subfamily B member 3 OS=Mus musculus ... [more]
DNAJ_MYCGE1.747e-1336.84Chaperone protein dnaJ OS=Mycoplasma genitalium GN... [more]
DNAJ_THEM42.282e-1336.17Chaperone protein dnaJ OS=Thermosipho melanesiensi... [more]
DNAJ_THEAB3.892e-1334.93Chaperone protein dnaJ OS=Thermosipho africanus (s... [more]
DNAJ_METCA5.083e-1354.55Chaperone protein dnaJ OS=Methylococcus capsulatus... [more]
DNJB3_HUMAN8.670e-1354.55DnaJ homolog subfamily B member 3 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2BD04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256813 ID=DY256813; Name=DY256813; organism=Citrus clementina; type=EST; length=953bp
GCGGGGGTCTCTCTTCCCTTCATCACCCGTACAGTCGTCAATAATCCCCT
TTTAAGTCTCTAAACGCAACACATACCCAGGAGGTGAGAAGGATTAAAAA
AAAAAAAACAATTAAAAAAAAGGAGAAACCAAAAAATTCCTTTATTTTTC
TCTGCTTTATCAATCCTCCAAATGCTCTCTTCATAACAGTTTGTTTCCGT
TTCTTCATATGATTTTATCTTGACAAGCATATTACATCCTTATTGCTGTT
TTCTTTTTTGGTTGCTGTGATGGATGGAGGAGGAGGATCCAACGGCGGAT
CTTTGAGCTACTACGCGATTCTTGGGATTCGCAAGGACGCCTCCTTCTCT
GACATTCGCTCCGCTTATCACAAGCTCGCCATGAAATGGCATCCGGATAG
GAGTGCGAAGAACCCGGGAGTGGCCGGGGAAGCCAAACGCCGGTTTCAGC
AAATTCAAGAAGCTTACTCCGTCCTCTCGGATGAGAACAAGAGGTCAATG
TACGATGCTGGACTTTATGATCCCCTTGAGGAAGAAGATGAGGACTTCTA
TGGTTTTATGCAAGAGATGGTCTCCATGATGAATAATGTTAAAGACGAGG
GGGACAGTTTTGAGGACCTCCAAAGGACGTTCGTGGAAATGGTGGATGGG
ATGAGCTTCGACTTTAATTATGATCCTACGGATGCGCAAAAAGCACGTGT
CAACACATCAAAGGGTAAAGCGGCCAAGCGCGGTACTTCTCGTTGCTGAC
AATCGCTCTGGATCATCTCTGATCATTTCAGCTAATGATGATGTTGTTTA
TCAATTCCCCCCATTTTGTTCTAAATCTCAAATTAATCCCCATGTTGGGG
GTTGGTAGTTTTAAGAAATTTTTTTTTTTTTTTAATCCCCCGGGGGGGTA
GCATTTTGGACCTGAAAACTTTCCTTAAAAAATAAAATCCCTTTTTAAGG
TAA
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