DY256813

Overview
NameDY256813
Unique NameDY256813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length953
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256813_ssr276 microsatellite DY256813_ssr276:276..287. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig996 contig Ccv1_Contig996:1..953. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_STAEQ (Chaperone protein dnaJ OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.586e-12
Identity = 53/157 (33.76%), Postives = 72/157 (45.86%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD-------AGLYDPLEEEDEDFYGFMQEMVSMMNNVKDEGD-----SFEDLQRTFVEMVDGMSFDFNYDPTDAQKARVNTSKGKAAKRGTSR 743
            YY +LG+ K AS  +I+ AY KL+ K+HPD + K  G    A  +F++I EAY VLSDENKR  YD        G +        DF GF     S       + D       +DLQ T     +   F    + +  +    +T  G  AK GTS+
Sbjct:    6 YYEVLGVNKSASKDEIKKAYRKLSKKYHPDIN-KEEG----ADEKFKEISEAYEVLSDENKRVNYDQFGHDGPQGGFGSQGFGGSDFGGFEDIFSSFFGGGSRQRDPNAPRKGDDLQYTMTITFEEAVFGTKKEISIKKDVTCHTCNGDGAKPGTSK 157          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAB (Chaperone protein dnaJ OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.586e-12
Identity = 56/166 (33.73%), Postives = 78/166 (46.99%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE------EDEDFYGF-------MQEMVSMM--------NNVKDEGDSFEDLQRTFVEMVDGMSFDFNYDPTDAQKARVNTSKGKAAKRGTSR 743
            YY +LGI KDAS  +I+ AY KL+ K+HPD + K  G    A  +F++I EAY VLSD+NKR+ YD   +D  +          DF GF        +++ S           N   +GD   DLQ T     +   F    + +  +     T  G  AK GTS+
Sbjct:    6 YYEVLGISKDASKDEIKKAYRKLSKKYHPDIN-KEEG----ADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNASQKGD---DLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSK 163          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_FRATU (Chaperone protein dnaJ OS=Francisella tularensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.586e-12
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD 506
            YY IL I K AS  +I+ AY KLAMK+HPDR   NPG   EA+ +F++I EAY +LSD++KRS YD
Sbjct:    6 YYEILNISKTASGVEIKRAYRKLAMKYHPDR---NPG-DKEAEIKFKEISEAYEILSDDSKRSRYD 67          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_FRATH (Chaperone protein dnaJ OS=Francisella tularensis subsp. holarctica (strain LVS) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.586e-12
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD 506
            YY IL I K AS  +I+ AY KLAMK+HPDR   NPG   EA+ +F++I EAY +LSD++KRS YD
Sbjct:    6 YYEILNISKTASGVEIKRAYRKLAMKYHPDR---NPG-DKEAEIKFKEISEAYEILSDDSKRSRYD 67          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DJC21_DANRE (DnaJ homolog subfamily C member 21 OS=Danio rerio GN=dnajc21 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.586e-12
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYD 506
            +Y +LG+++DAS  D++ AY KLA+KWHPD++  N   A +A  +F+ IQ AY VLSD  +R+ YD
Sbjct:    4 HYEVLGVKRDASDDDLKKAYRKLALKWHPDKNLDN---AEDAAEQFKLIQAAYDVLSDPQERAWYD 66          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAW (Chaperone protein dnaJ OS=Staphylococcus aureus (strain MW2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.252e-11
Identity = 56/166 (33.73%), Postives = 78/166 (46.99%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE------EDEDFYGF-------MQEMVSMM--------NNVKDEGDSFEDLQRTFVEMVDGMSFDFNYDPTDAQKARVNTSKGKAAKRGTSR 743
            YY +LGI KDAS  +I+ AY KL+ K+HPD + K  G    A  +F++I EAY VLSD+NKR+ YD   +D  +          DF GF        +++ S           N   +GD   DLQ T     +   F    + +  +     T  G  AK GTS+
Sbjct:    6 YYEVLGISKDASKDEIKKAYRKLSKKYHPDIN-KEEG----ADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGD---DLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSK 163          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAT (Chaperone protein dnaJ OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.252e-11
Identity = 56/166 (33.73%), Postives = 78/166 (46.99%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE------EDEDFYGF-------MQEMVSMM--------NNVKDEGDSFEDLQRTFVEMVDGMSFDFNYDPTDAQKARVNTSKGKAAKRGTSR 743
            YY +LGI KDAS  +I+ AY KL+ K+HPD + K  G    A  +F++I EAY VLSD+NKR+ YD   +D  +          DF GF        +++ S           N   +GD   DLQ T     +   F    + +  +     T  G  AK GTS+
Sbjct:    6 YYEVLGISKDASKDEIKKAYRKLSKKYHPDIN-KEEG----ADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGD---DLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSK 163          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAS (Chaperone protein dnaJ OS=Staphylococcus aureus (strain MSSA476) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.252e-11
Identity = 56/166 (33.73%), Postives = 78/166 (46.99%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE------EDEDFYGF-------MQEMVSMM--------NNVKDEGDSFEDLQRTFVEMVDGMSFDFNYDPTDAQKARVNTSKGKAAKRGTSR 743
            YY +LGI KDAS  +I+ AY KL+ K+HPD + K  G    A  +F++I EAY VLSD+NKR+ YD   +D  +          DF GF        +++ S           N   +GD   DLQ T     +   F    + +  +     T  G  AK GTS+
Sbjct:    6 YYEVLGISKDASKDEIKKAYRKLSKKYHPDIN-KEEG----ADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGD---DLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSK 163          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAR (Chaperone protein dnaJ OS=Staphylococcus aureus (strain MRSA252) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.252e-11
Identity = 56/166 (33.73%), Postives = 78/166 (46.99%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE------EDEDFYGF-------MQEMVSMM--------NNVKDEGDSFEDLQRTFVEMVDGMSFDFNYDPTDAQKARVNTSKGKAAKRGTSR 743
            YY +LGI KDAS  +I+ AY KL+ K+HPD + K  G    A  +F++I EAY VLSD+NKR+ YD   +D  +          DF GF        +++ S           N   +GD   DLQ T     +   F    + +  +     T  G  AK GTS+
Sbjct:    6 YYEVLGISKDASKDEIKKAYRKLSKKYHPDIN-KEEG----ADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGD---DLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSK 163          
BLAST of DY256813 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAN (Chaperone protein dnaJ OS=Staphylococcus aureus (strain N315) GN=dnaJ PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.252e-11
Identity = 56/166 (33.73%), Postives = 78/166 (46.99%), Query Frame = 3
Query:  309 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKRRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE------EDEDFYGF-------MQEMVSMM--------NNVKDEGDSFEDLQRTFVEMVDGMSFDFNYDPTDAQKARVNTSKGKAAKRGTSR 743
            YY +LGI KDAS  +I+ AY KL+ K+HPD + K  G    A  +F++I EAY VLSD+NKR+ YD   +D  +          DF GF        +++ S           N   +GD   DLQ T     +   F    + +  +     T  G  AK GTS+
Sbjct:    6 YYEVLGISKDASKDEIKKAYRKLSKKYHPDIN-KEEG----ADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGD---DLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSK 163          
The following BLAST results are available for this feature:
BLAST of DY256813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
DNAJ_STAEQ9.586e-1233.76Chaperone protein dnaJ OS=Staphylococcus epidermid... [more]
DNAJ_STAAB9.586e-1233.73Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_FRATU9.586e-1257.58Chaperone protein dnaJ OS=Francisella tularensis G... [more]
DNAJ_FRATH9.586e-1257.58Chaperone protein dnaJ OS=Francisella tularensis s... [more]
DJC21_DANRE9.586e-1248.48DnaJ homolog subfamily C member 21 OS=Danio rerio ... [more]
DNAJ_STAAW1.252e-1133.73Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAT1.252e-1133.73Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAS1.252e-1133.73Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAR1.252e-1133.73Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAN1.252e-1133.73Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2BD04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256813 ID=DY256813; Name=DY256813; organism=Citrus clementina; type=EST; length=953bp
GCGGGGGTCTCTCTTCCCTTCATCACCCGTACAGTCGTCAATAATCCCCT
TTTAAGTCTCTAAACGCAACACATACCCAGGAGGTGAGAAGGATTAAAAA
AAAAAAAACAATTAAAAAAAAGGAGAAACCAAAAAATTCCTTTATTTTTC
TCTGCTTTATCAATCCTCCAAATGCTCTCTTCATAACAGTTTGTTTCCGT
TTCTTCATATGATTTTATCTTGACAAGCATATTACATCCTTATTGCTGTT
TTCTTTTTTGGTTGCTGTGATGGATGGAGGAGGAGGATCCAACGGCGGAT
CTTTGAGCTACTACGCGATTCTTGGGATTCGCAAGGACGCCTCCTTCTCT
GACATTCGCTCCGCTTATCACAAGCTCGCCATGAAATGGCATCCGGATAG
GAGTGCGAAGAACCCGGGAGTGGCCGGGGAAGCCAAACGCCGGTTTCAGC
AAATTCAAGAAGCTTACTCCGTCCTCTCGGATGAGAACAAGAGGTCAATG
TACGATGCTGGACTTTATGATCCCCTTGAGGAAGAAGATGAGGACTTCTA
TGGTTTTATGCAAGAGATGGTCTCCATGATGAATAATGTTAAAGACGAGG
GGGACAGTTTTGAGGACCTCCAAAGGACGTTCGTGGAAATGGTGGATGGG
ATGAGCTTCGACTTTAATTATGATCCTACGGATGCGCAAAAAGCACGTGT
CAACACATCAAAGGGTAAAGCGGCCAAGCGCGGTACTTCTCGTTGCTGAC
AATCGCTCTGGATCATCTCTGATCATTTCAGCTAATGATGATGTTGTTTA
TCAATTCCCCCCATTTTGTTCTAAATCTCAAATTAATCCCCATGTTGGGG
GTTGGTAGTTTTAAGAAATTTTTTTTTTTTTTTAATCCCCCGGGGGGGTA
GCATTTTGGACCTGAAAACTTTCCTTAAAAAATAAAATCCCTTTTTAAGG
TAA
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