DY256816

Overview
NameDY256816
Unique NameDY256816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length898
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256816 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.206e-26
Identity = 57/144 (39.58%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  158 RMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 589
            ++ST A KR+ ++   +  DPP   S  P+ ++I  W + I GP  + ++GG F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:   58 KLSTSA-KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQ 200          
BLAST of DY256816 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.206e-26
Identity = 57/144 (39.58%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  158 RMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 589
            ++ST A KR+ ++   +  DPP   S  P+ ++I  W + I GP  + ++GG F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:   58 KLSTSA-KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQ 200          
BLAST of DY256816 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.400e-25
Identity = 60/148 (40.54%), Postives = 86/148 (58.11%), Query Frame = 2
Query:  161 MSTPARKRLMRDFKRLQQDPPAGISGAP---QDNSIML--WNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL--QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRV 583
            MS+   +RL  + K+ ++D P G    P    D S+ L  W A I G + T W GG + +T+++  +YP+KPP V+F +  +HPN+Y  G+ICL IL     W P   +  I+  +Q LL  PNPNSPA   A R FS NK EY+++V
Sbjct:    1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 148          
BLAST of DY256816 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.400e-25
Identity = 57/143 (39.86%), Postives = 85/143 (59.44%), Query Frame = 2
Query:  161 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 589
            +ST A KR+ ++   +  DPP   S  P+ ++I  W + I GP  + ++GG F L + FT +YP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:   45 LSTSA-KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 186          
BLAST of DY256816 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.400e-25
Identity = 57/143 (39.86%), Postives = 85/143 (59.44%), Query Frame = 2
Query:  161 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 589
            +ST A KR+ ++   +  DPP   S  P+ ++I  W + I GP  + ++GG F L + FT +YP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:   45 LSTSA-KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 186          
BLAST of DY256816 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.388e-25
Identity = 59/149 (39.60%), Postives = 84/149 (56.38%), Query Frame = 2
Query:  161 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 586
            MS  A  RL ++ K  ++D P G+   P  N     ++M     I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  +F +++ EY +RVR
Sbjct:    1 MSGIALSRLAQERKAWRKDHPLGLVAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRVR 149          
BLAST of DY256816 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.073e-25
Identity = 57/149 (38.26%), Postives = 82/149 (55.03%), Query Frame = 2
Query:  161 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 586
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  +   IQ LL +PN   PA +EA  ++ +N+ EY +R R
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELLNEPNIQEPAQAEAYTIYCQNRVEYEKRFR 149          
BLAST of DY256816 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.073e-25
Identity = 49/137 (35.77%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  179 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 589
            KR++++ + L +DPP GI  AP ++++  +   + GP  + ++GG F L L   ++YP  PP VRF+++++HPN+   G ICL  L+  WSP   +  +L SIQ+L+  PNP+ P +++ A+++ EN+ +     RE
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANARE 141          
BLAST of DY256816 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.947e-25
Identity = 49/140 (35.00%), Postives = 89/140 (63.57%), Query Frame = 2
Query:  173 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 589
            A KRL ++   + + PP+  S    D+++  W A + GP+ +P++ G F + +    DYP KPPT++F ++++HPNI  +DG+IC ++  + WSP   +  +LT+I+S+L DPNP++P  +E A+ F  ++  +N+  +E
Sbjct:    3 AHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVF-STWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKE 141          
BLAST of DY256816 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.073e-25
Identity = 56/148 (37.84%), Postives = 89/148 (60.14%), Query Frame = 2
Query:  170 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 613
            P  KRL ++   L      GIS  P+ +++  W   I G   T ++   +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN +SP N+ AA ++ +N   + + ++E   +  T+
Sbjct:   30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176          
The following BLAST results are available for this feature:
BLAST of DY256816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
UB2E3_HUMAN8.206e-2639.58Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN8.206e-2639.58Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UBC9_YEAST1.400e-2540.54SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]
UB2E1_MOUSE1.400e-2539.86Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN1.400e-2539.86Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBC9_PAGMA2.388e-2539.60SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC9_MESAU4.073e-2538.26SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UBC13_SCHPO4.073e-2535.77Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBCB_DICDI6.947e-2535.00Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBE2C_MACFA9.073e-2537.84Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2BD11ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256816 ID=DY256816; Name=DY256816; organism=Citrus clementina; type=EST; length=898bp
GGACTCTCTCTCTCTTGTTTCTCTGATCAAATTGAGTACCATGGAATTCT
TTCTCTGATACCGCCCGCTTTTCGATTGTTTCCCGAGAAAATCTCGCTGC
GATTCTGAAGCTTTTACTGCAATCAACGCTACTTGCCGCGTCAGCTCGTA
GGCAGTGAGAATGTCGACTCCTGCAAGGAAGAGATTGATGAGGGATTTTA
AGAGGTTACAACAAGATCCTCCGGCTGGCATTAGTGGTGCTCCTCAGGAC
AACAGTATAATGCTTTGGAATGCTGTTATATTCGGGCCGGATGATACCCC
ATGGGATGGAGGTACGTTTAAATTGACACTTCAGTTCACAGAGGATTATC
CAAATAAGCCACCAACAGTGCGCTTTGTTTCTCGAATGTTCCATCCAAAT
ATTTATGCGGATGGAAGCATTTGCTTGGACATTCTACAAAATCAGTGGAG
TCCGATTTACGATGTAGCAGCAATACTCACGTCAATTCAGTCATTGCTTT
GTGACCCAAATCCAAACTCTCCTGCAAATTCGGAGGCAGCGCGGATGTTT
AGCGAGAACAAGCGTGAATACAATAGGAGAGTACGGGAAATTGTTGAGCA
GAGTTGGACTGCTGACTAGTGGCAACTTGTTGGAATGTAGGGAACTTCAA
AAGTAGTCCAATGGCTTGTTCTAAATAACATTTAAGATTCAAAAGGTTGG
TGGTGTGAACTCTTGACATGTTTTATGTTTGTTTCGGCTTATGAGGATGG
ATGGTTGGCCTCTTATTGTAATTTCTCGTCTTTGGGTACATTGAACTCCA
CTCCAATTGTGTACATGTTATTTACTTGAACTGGGGTCTTGAAGGGAACA
ATATGAAGAACCTATGCAGGCTGTGTGCATATAGTTCTTTGGGGGGTG
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