DY256826

Overview
NameDY256826
Unique NameDY256826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length839
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13823 contig Ccv1_Contig13823:978..1817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY256826 vs. ExPASy Swiss-Prot
Match: SC61A_BORSA (Protein transport protein Sec61 subunit alpha OS=Boreogadus saida GN=sec61a PE=2 SV=3)

HSP 1 Score: 271.552 bits (693), Expect = 3.996e-72
Identity = 136/199 (68.34%), Postives = 161/199 (80.90%), Query Frame = 2 
Query:    2 QQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFDKERASELGFFG 592
            Q   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL Y+++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  275 QYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFIVNLLGTWSDTSTGGPARAYPVGGLCYFLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEMGSMG 472
[Close]
BLAST of DY256826 vs. ExPASy Swiss-Prot
Match: S61A1_RAT (Protein transport protein Sec61 subunit alpha isoform 1 OS=Rattus norvegicus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 3.996e-72
Identity = 137/199 (68.84%), Postives = 162/199 (81.41%), Query Frame = 2 
Query:    2 QQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFDKERASELGFFG 592
            Q   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  275 QYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of DY256826 vs. ExPASy Swiss-Prot
Match: S61A1_PONAB (Protein transport protein Sec61 subunit alpha isoform 1 OS=Pongo abelii GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 271.552 bits (693), Expect = 3.996e-72
Identity = 137/199 (68.84%), Postives = 162/199 (81.41%), Query Frame = 2 
Query:    2 QQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFDKERASELGFFG 592
            Q   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  275 QYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of DY256826 vs. ExPASy Swiss-Prot
Match: S61A1_MOUSE (Protein transport protein Sec61 subunit alpha isoform 1 OS=Mus musculus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 3.996e-72
Identity = 137/199 (68.84%), Postives = 162/199 (81.41%), Query Frame = 2 
Query:    2 QQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFDKERASELGFFG 592
            Q   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  275 QYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of DY256826 vs. ExPASy Swiss-Prot
Match: S61A1_HUMAN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Homo sapiens GN=SEC61A1 PE=1 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 3.996e-72
Identity = 137/199 (68.84%), Postives = 162/199 (81.41%), Query Frame = 2 
Query:    2 QQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFDKERASELGFFG 592
            Q   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  275 QYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of DY256826 vs. ExPASy Swiss-Prot
Match: S61A1_BOVIN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Bos taurus GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 271.552 bits (693), Expect = 3.996e-72
Identity = 137/199 (68.84%), Postives = 162/199 (81.41%), Query Frame = 2 
Query:    2 QQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFDKERASELGFFG 592
            Q   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  275 QYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of DY256826 vs. ExPASy Swiss-Prot
Match: S61A2_ONCMY (Protein transport protein Sec61 subunit alpha isoform B OS=Oncorhynchus mykiss GN=sec61ab PE=2 SV=3)

HSP 1 Score: 270.781 bits (691), Expect = 6.817e-72
Identity = 136/199 (68.34%), Postives = 159/199 (79.90%), Query Frame = 2 
Query:    2 QQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFDKERASELGFFG 592
            Q   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL YY + P S   +  +P HA  Y+ FML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  275 QYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSSGGPARAYPVGGLCYYFSPPESFGSVLDDPIHAAIYICFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEMGSMG 472
[Close]
BLAST of DY256826 vs. ExPASy Swiss-Prot
Match: SC61A_PAGBO (Protein transport protein Sec61 subunit alpha OS=Pagothenia borchgrevinki GN=sec61a PE=2 SV=3)

HSP 1 Score: 270.396 bits (690), Expect = 8.903e-72
Identity = 136/199 (68.34%), Postives = 160/199 (80.40%), Query Frame = 2 
Query:    2 QQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFDKERASELGFFG 592
            Q   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  275 QYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEMGSMG 472
[Close]
BLAST of DY256826 vs. ExPASy Swiss-Prot
Match: SC61A_NOTAN (Protein transport protein Sec61 subunit alpha OS=Notothenia angustata GN=sec61a PE=2 SV=3)

HSP 1 Score: 270.396 bits (690), Expect = 8.903e-72
Identity = 136/199 (68.34%), Postives = 160/199 (80.40%), Query Frame = 2 
Query:    2 QQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFDKERASELGFFG 592
            Q   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  275 QYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEMGSMG 472
[Close]
BLAST of DY256826 vs. ExPASy Swiss-Prot
Match: SC61A_HARAN (Protein transport protein Sec61 subunit alpha OS=Harpagifer antarcticus GN=sec61a PE=2 SV=3)

HSP 1 Score: 270.396 bits (690), Expect = 8.903e-72
Identity = 136/199 (68.34%), Postives = 160/199 (80.40%), Query Frame = 2 
Query:    2 QQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFDKERASELGFFG 592
            Q   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  275 QYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEMGSMG 472
The following BLAST results are available for this feature:
BLAST of DY256826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC61A_BORSA3.996e-7268.34Protein transport protein Sec61 subunit alpha OS=B... [more]
S61A1_RAT3.996e-7268.84Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_PONAB3.996e-7268.84Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_MOUSE3.996e-7268.84Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_HUMAN3.996e-7268.84Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_BOVIN3.996e-7268.84Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_ONCMY6.817e-7268.34Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_PAGBO8.903e-7268.34Protein transport protein Sec61 subunit alpha OS=P... [more]
SC61A_NOTAN8.903e-7268.34Protein transport protein Sec61 subunit alpha OS=N... [more]
SC61A_HARAN8.903e-7268.34Protein transport protein Sec61 subunit alpha OS=H... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2BF06ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256826 ID=DY256826; Name=DY256826; organism=Citrus clementina; type=EST; length=839bp
GCAACAGGGTGCTTATCCAATTAAGCTATTCTACACATCCAACATGCCTA
TCATTCTCCAATCTGCACTTGTCTCAAATCTGTATTTCATCTCTCAGTTG
CTCTACAGGAAGTACAGTGGCAATTTCTTTGTTAATCTGTTAGGGAAGTG
GAAGGAATCTGAATATTCTGGCCACTCTATTCCAGTTGGTGGCCTAGCTT
ATTATGTCACTGCACCAGCAAGCTTGGCTGATATGGCAGCCAATCCTTTC
CATGCTCTGTTCTACCTGGTTTTTATGCTTACTGCTTGTGCTCTTTTCTC
GAAAACTTGGATTGAAGTTTCAGGGTCTTCTGCCCGGGATGTGGCCAAGC
AGCTTAAGGAGCAACAAATGGTGATGCCTGGACATAGAGACTCAAATCTT
CAAAAGGAACTGAACCGATACATACCAACTGCTGCTGCCTTTGGCGGAGT
GTGCATTGGTGCATTAACAGTCCTGGCTGATTTCATGGGAGCAATTGGGT
CAGGAACTGGGATATTGCTCGCAGTTACCATCATATATCAGTACTTTGAG
ACGTTTGACAAGGAGAGAGCTAGTGAACTTGGCTTCTTTGGCTTTTAATA
AACCAATGATCTTGAGTTTCAGATTAGTTGGTGAGTAGTATTGTGCAATA
TTGTTGCAGAATTCAAAGACTTAACATACGCCATACCTTGTTAACACCTA
TGAATAGAGATTCAGATCAGTCTGTAGTTTGGCCAATGCTTAGCCGCATT
TCTTTTTTCTTTTGAAATTTCTGTACGTTCACCACTCCAAGGAAAATAGA
AAGATTTCTGTAGAAACTATATGTTCTTGTTTTAGCAAA
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