DY256843

Overview
NameDY256843
Unique NameDY256843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.533e-45
Identity = 105/227 (46.26%), Postives = 138/227 (60.79%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKE---TQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNIPYSNQPAHSEG----SFGHLHSNGTLHLGHNPG 917
            MGRG+VELKR+ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FS+RGKLYEFCS+ SM KTLE+Y++C+YG  + N  S +      +S +EY+KLK ++E+LQ  QR                           Q+RS +T+  LD+L +LQRKE +L EAN  L  ++E           +AE+      +Q  H+ G        +    TL +G++ G
Sbjct:    1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRMEGYQINSLQLNLSAEDMGYGRHHQ-GHTHGDELFQVQPIECEPTLQIGYHQG 226          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.002e-45
Identity = 98/177 (55.37%), Postives = 123/177 (69.49%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQ---ASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 779
            MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS SM +TLE+Y++C+YG  + N  S +      +S +EY+KLKE+++ALQ  QR                           Q+R+L+T+  LD+L++LQ KE ML E N  L ++L +
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLAD 177          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 9.934e-45
Identity = 98/175 (56.00%), Postives = 120/175 (68.57%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQ-ASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 779
            MGRG+VELKRIE KINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS SM KTLE+Y++C+YG  + N  + +  + +S +EY+KLK ++EALQ  QR                           Q+RS +T+  LD+L++ QRKE  L EAN  L  +L E
Sbjct:    1 MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQRLME 175          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 4.615e-42
Identity = 101/219 (46.12%), Postives = 132/219 (60.27%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQAS-YEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNIPYSNQPAHSEGSF-GHLHSNGTLHLGH 908
            MGRGKVELKRIENKI+RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RG+L+EF +S  M+KTLE+Y  C+Y        +A ET+ S Y+EY+KLK + E LQ  QR                            +RS K +  LD++ EL+RKE+ L +AN  L  K++E +     H      Q++  S   + +   F  H   + +LH+G+
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLH---ISCQDVGPSGHASEANQEFLHHAICDPSLHIGY 216          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 4.615e-42
Identity = 101/219 (46.12%), Postives = 132/219 (60.27%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQAS-YEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNIPYSNQPAHSEGSF-GHLHSNGTLHLGH 908
            MGRGKVELKRIENKI+RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RG+L+EF +S  M+KTLE+Y  C+Y        +A ET+ S Y+EY+KLK + E LQ  QR                            +RS K +  LD++ EL+RKE+ L +AN  L  K++E +     H      Q++  S   + +   F  H   + +LH+G+
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLH---ISCQDVGPSGHASEANQEFLHHAICDPSLHIGY 216          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 6.027e-42
Identity = 95/186 (51.08%), Postives = 121/186 (65.05%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN--AARRSHPW 809
            MGRGKV L+RIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVAL++FS  G+LY+F SS +M KTLE+Y+R  Y +  A   ++ E Q +Y+EY+ LK   E LQ  QR                           Q+RS KT+  LD+L +L+RKE+ML +AN +L  KL+EI+  AA    PW
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDVEAAPPQPPW 186          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 7.871e-42
Identity = 106/234 (45.30%), Postives = 138/234 (58.97%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSH-PW----AAEEQNIPYSNQPAHSEGSFGHLH---SNGTLHLG-HNPGVTAHE 932
            MGRGKVELKRIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+L+EF SS  M+KTLE+Y  C+Y +  A   +A E + +Y+EY+KLK + E LQ  QR                           Q+RS K +  LD+L +L+ KE+ L + N  L  KL+E +A    H  W         +   ++QP H +G   H H    + +L +G H+P    H+
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDA---AAPENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLL-HPHPDQGDHSLQIGYHHPHAHHHQ 230          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 7.871e-42
Identity = 106/234 (45.30%), Postives = 138/234 (58.97%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSH-PW----AAEEQNIPYSNQPAHSEGSFGHLH---SNGTLHLG-HNPGVTAHE 932
            MGRGKVELKRIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+L+EF SS  M+KTLE+Y  C+Y +  A   +A E + +Y+EY+KLK + E LQ  QR                           Q+RS K +  LD+L +L+ KE+ L + N  L  KL+E +A    H  W         +   ++QP H +G   H H    + +L +G H+P    H+
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDA---AAPENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLL-HPHPDQGDHSLQIGYHHPHAHHHQ 230          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.343e-41
Identity = 114/253 (45.06%), Postives = 138/253 (54.55%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINA-----ARRSHPW---AAEEQNIPYSNQPAHSEGSFGHLHSNGTLHLGH-NPGVTAHEKTVATSKTRC-SQLNFQAG 986
            MGRG+VELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF  S  + KTLE+Y+ C Y    +N+ +  ETQ+ Y E  KLK K EALQ  QR                           Q R  KT+  ++++ EL+RKE  L E N  L  KLE   +     A +   W   A  E    Y   P HS      + S  TL +G+ +  V A   T+  S     ++ NF  G
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGITKTLERYQHCCYNAQDSNN-ALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVENGAAYVQPPPHSAA----MDSEPTLQIGYPHQFVPAEANTIQRSTAPAGAENNFMLG 247          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 1.176e-37
Identity = 93/174 (53.45%), Postives = 108/174 (62.07%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSA-KETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLE 776
            MGRG+VELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF  S  ++KTLEKY  C Y    +N   A  E Q+ Y+E  +LK K E LQ  QR                           Q R  KT+  ++++ +L+RKE  L E N  L  KLE
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLE 173          
The following BLAST results are available for this feature:
BLAST of DY256843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MTF1_PEA1.533e-4546.26MADS-box transcription factor 1 OS=Pisum sativum G... [more]
AGL9_SINAL2.002e-4555.37Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_SOLLC9.934e-4556.00Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
MADS5_ORYSJ4.615e-4246.12MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI4.615e-4246.12MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MAD34_ORYSJ6.027e-4251.08MADS-box transcription factor 34 OS=Oryza sativa s... [more]
MADS1_ORYSJ7.871e-4245.30MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI7.871e-4245.30MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS6_ORYSJ1.343e-4145.06MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MAD17_ORYSJ1.176e-3753.45MADS-box transcription factor 17 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2CA07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256843 ID=DY256843; Name=DY256843; organism=Citrus clementina; type=EST; length=1280bp
GATCTGATGAAACCAAACCAATTAGCAAAATTAAAGGTACCCAACTCAGA
TCAAGTCAATTTAATCTCTCCTTTTAGGAGTGTTCTATACTAAATCTTAA
ACCTAGCTATCAAAGCAACCTGATCCCAGCTTCTTGCCCTAAACAACAAG
ATCTGCAGAAACAAAATCTACTAATTTATAATTTATTTTTTAGCCTAAAG
AAACCCAAAAAAAACAAAAAATCATCCAGCTATCCAGCACTTGTAAGTAT
ATTAATAATGGGAAGGGGAAAAGTAGAGCTGAAGAGGATAGAGAACAAAA
TAAATCGACAGGTGACTTTTGCAAAGAGAAGGAATGGATTGTTAAAGAAA
GCTTATGAGCTCTCAGTTTTGTGTGATGCTGAGGTTGCTCTTATCATCTT
CTCTAGCCGCGGGAAGCTCTATGAATTCTGCAGCAGCCCTAGTATGCACA
AGACACTTGAGAAGTATGAAAGGTGTAGTTATGGAACACTGCAAGCAAAT
CATCAATCAGCCAAAGAGACGCAGGCCAGCTACGAGGAATACATAAAACT
CAAAGAGAAACATGAGGCCCTACAGCACTTGCAAAGACAATTTTTTGGGG
AAGATTTGGGACGCTTAGGCTTAGAGGAGTTGGAACAGCTTGAGAGACAG
CTGGGCAGTTCATTGGGCCAAGTAAGGTCACTCAAGACCCGGAATCAGCT
GGATAAGCTTTCTGAACTTCAAAGGAAGGAAGAAATGTTGCTGGAAGCCA
ATAATATTTTAAGTATGAAGTTGGAGGAAATTAATGCAGCTCGGAGATCA
CATCCATGGGCAGCTGAGGAACAAAACATTCCATACAGCAACCAACCTGC
TCATTCGGAGGGTTCTTTTGGGCATTTACACAGCAATGGTACATTGCACT
TGGGTCACAATCCTGGAGTAACAGCTCATGAAAAGACTGTTGCTACTTCA
AAAACAAGATGTTCACAGCTTAATTTCCAGGCTGGGATGCTCTGAGCTAT
CAACATCCGGGAACATGCATCAACAATTTTTTAAGTGGGGAACTGGGCAC
AAAACAAAAAAAAAAGTCCTGGGGCTACTGGAATTGGTAACTTAAAGTTT
ATCGAAAAAACCAACCTGGATTTAAAGAATGGGGGCAAAGGCCATTTTTT
AATAAAGGGGTGAAAAAAAACCCAAATTGTTTAAAATTTGGAATCCCCTG
GGCTTTTCATAAATTTTTAAAAAAAAAACCGGGGAAAAACCCGTGGATAA
AAAATTTCTCAGGGGAAAAAGGGGACCCCG
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