DY256843

Overview
NameDY256843
Unique NameDY256843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.682e-15
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKY 467
            MGR K++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+   KL+++ S+  M K L KY
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST-DMDKVLLKY 69          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.682e-15
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKY 467
            MGR K++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+   KL+++ S+  M K L KY
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST-DMDKVLLKY 69          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.682e-15
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKY 467
            MGR K++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+   KL+++ S+  M K L KY
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST-DMDKVLLKY 69          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 8.202e-15
Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCS 479
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF+S  +L+++ S+  M + L KY   S
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST-DMDRVLLKYTEYS 73          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.071e-14
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKY 467
            M R + E++RIE+   RQVTF+KRR GL KKA EL+VLCDA+VAL++FSS GKL +F SS +M++ ++KY
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASS-NMNEIIDKY 69          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.399e-14
Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCS 479
            MGR K+++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD ++ALIIF+S  +L+++ SS  M + L KY   S
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQYASS-DMDRVLLKYTEYS 73          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.944e-14
Identity = 52/153 (33.99%), Postives = 78/153 (50.98%), Query Frame = 3
Query:  336 GLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP-SMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAA 791
            GLLKKA EL++LCDA++ +IIFSS GK++EF S P SM + +++Y++     L  N     + Q  Y E  ++K + + LQ   R F                         +VRS K +    +L  L+RKE ML E N  L   +++ +AA
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQK-----LSGNCAPVYDNQQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQNRELYRVIQDHHAA 149          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: RLM1_YEAST (Transcription factor RLM1 OS=Saccharomyces cerevisiae GN=RLM1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.502e-11
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 434
            MGR K+E++RI +  NR VTF KR+ GL KKA+ELSVLC  ++A+II  S    YEF S
Sbjct:    1 MGRRKIEIQRISDDRNRAVTFIKRKAGLFKKAHELSVLCQVDIAVIILGSNNTFYEFSS 59          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: PVG4_SCHPO (MADS-box transcription factor pvg4 OS=Schizosaccharomyces pombe GN=pvg4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.186e-11
Identity = 40/110 (36.36%), Postives = 56/110 (50.91%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMH-----KTLEKYE---RCSYGTLQANHQSAKETQASYEEYIKLKEKH 563
            MGR K+ +  I +  +R VTF KR+ GL KKAYEL+VL D EVA+ +   +G+L+ FCSS          TL  YE   R  + +      S    + +   +  L  KH
Sbjct:    1 MGRKKISIAPITDDRSRSVTFVKRKQGLYKKAYELAVLADCEVAVTVIDRKGRLHVFCSSDYQRTLQQLNTLSIYELKNRSHFSSSPVEESSTVSPETTTGSFTPLNNKH 110          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.385e-11
Identity = 41/121 (33.88%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKL----------KEKHEALQHLQRQ 590
            +GR K+ + +I+ + +RQVTF+KRR GL KKA EL  LC AE+ +I+FS   K + F   PS+   L++Y   +  +L  + Q      AS E  ++L          K+K +A++ ++++
Sbjct:   62 IGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF-GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEMRKE 181          
The following BLAST results are available for this feature:
BLAST of DY256843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MEF2D_RAT3.682e-1558.57Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE3.682e-1558.57Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN3.682e-1558.57Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
MEF2B_HUMAN8.202e-1555.41Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MAD55_ORYSJ1.071e-1458.57MADS-box transcription factor 55 OS=Oryza sativa s... [more]
MEF2B_MOUSE1.399e-1455.41Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]
AP32_ASAEU6.944e-1433.99MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
RLM1_YEAST5.502e-1155.93Transcription factor RLM1 OS=Saccharomyces cerevis... [more]
PVG4_SCHPO7.186e-1136.36MADS-box transcription factor pvg4 OS=Schizosaccha... [more]
AGL61_ARATH9.385e-1133.88Agamous-like MADS-box protein AGL61 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2CA07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256843 ID=DY256843; Name=DY256843; organism=Citrus clementina; type=EST; length=1280bp
GATCTGATGAAACCAAACCAATTAGCAAAATTAAAGGTACCCAACTCAGA
TCAAGTCAATTTAATCTCTCCTTTTAGGAGTGTTCTATACTAAATCTTAA
ACCTAGCTATCAAAGCAACCTGATCCCAGCTTCTTGCCCTAAACAACAAG
ATCTGCAGAAACAAAATCTACTAATTTATAATTTATTTTTTAGCCTAAAG
AAACCCAAAAAAAACAAAAAATCATCCAGCTATCCAGCACTTGTAAGTAT
ATTAATAATGGGAAGGGGAAAAGTAGAGCTGAAGAGGATAGAGAACAAAA
TAAATCGACAGGTGACTTTTGCAAAGAGAAGGAATGGATTGTTAAAGAAA
GCTTATGAGCTCTCAGTTTTGTGTGATGCTGAGGTTGCTCTTATCATCTT
CTCTAGCCGCGGGAAGCTCTATGAATTCTGCAGCAGCCCTAGTATGCACA
AGACACTTGAGAAGTATGAAAGGTGTAGTTATGGAACACTGCAAGCAAAT
CATCAATCAGCCAAAGAGACGCAGGCCAGCTACGAGGAATACATAAAACT
CAAAGAGAAACATGAGGCCCTACAGCACTTGCAAAGACAATTTTTTGGGG
AAGATTTGGGACGCTTAGGCTTAGAGGAGTTGGAACAGCTTGAGAGACAG
CTGGGCAGTTCATTGGGCCAAGTAAGGTCACTCAAGACCCGGAATCAGCT
GGATAAGCTTTCTGAACTTCAAAGGAAGGAAGAAATGTTGCTGGAAGCCA
ATAATATTTTAAGTATGAAGTTGGAGGAAATTAATGCAGCTCGGAGATCA
CATCCATGGGCAGCTGAGGAACAAAACATTCCATACAGCAACCAACCTGC
TCATTCGGAGGGTTCTTTTGGGCATTTACACAGCAATGGTACATTGCACT
TGGGTCACAATCCTGGAGTAACAGCTCATGAAAAGACTGTTGCTACTTCA
AAAACAAGATGTTCACAGCTTAATTTCCAGGCTGGGATGCTCTGAGCTAT
CAACATCCGGGAACATGCATCAACAATTTTTTAAGTGGGGAACTGGGCAC
AAAACAAAAAAAAAAGTCCTGGGGCTACTGGAATTGGTAACTTAAAGTTT
ATCGAAAAAACCAACCTGGATTTAAAGAATGGGGGCAAAGGCCATTTTTT
AATAAAGGGGTGAAAAAAAACCCAAATTGTTTAAAATTTGGAATCCCCTG
GGCTTTTCATAAATTTTTAAAAAAAAAACCGGGGAAAAACCCGTGGATAA
AAAATTTCTCAGGGGAAAAAGGGGACCCCG
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