DY256843

Overview
NameDY256843
Unique NameDY256843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.538e-32
Identity = 75/174 (43.10%), Postives = 107/174 (61.49%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 779
            MGRG+V+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FSS+GKL+E+ +   M + LE+Y+R  Y   Q   +   +++    E+ KLK + E L+  +R F                          +RS K +   + +S LQ+K++ L + NN L  K++E
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKKIKE 174          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 5.654e-32
Identity = 87/228 (38.16%), Postives = 121/228 (53.07%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNIPYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAHEKTV 941
            MGRG+V+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV LI+FS++GKL+E+ +   M + LE+YER S+   Q          +   E+ KLK + E LQ  Q+ +                          +RS K +   + +S LQ+K+  L E NN LS K++E   +      A +   I  S+  AH++   G   S   +  G    V  H   V
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQLSKKVKEREKS------AQQISGINSSSLFAHTDFYLGTYQSTNVIDNGKWKEVVLHSSKV 222          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 1.645e-31
Identity = 79/174 (45.40%), Postives = 108/174 (62.07%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 779
            MGRGKVE+KRIENKI RQVTF+KR++GLLKKAYELSVLCDAEV+LIIFS+ GKLYEF S+  + +T+E+Y RC    L  ++ + ++TQ   +E  KLK K+E+L    R                             R  KT+  ++++ EL+RKE  L + NN L ++ E+
Sbjct:    1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEF-SNVGVGRTIERYYRCKDNLL--DNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKLKLETED 171          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 8.165e-31
Identity = 75/174 (43.10%), Postives = 104/174 (59.77%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 779
            MGRG+V+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV LI+FS++GKL+E+ +   M + LE+YER S+   Q          +   E+ KLK + E LQ  Q+ +                          +RS K +   + +S LQ+++  L E NN LS K++E
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKE 174          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 9.027e-30
Identity = 74/174 (42.53%), Postives = 103/174 (59.20%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 779
            MGRG+V+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV LI+FS++GKL+E+ +   M + LE+YER S+   Q          +   E  KLK + E LQ  ++ +                          +RS K +   + +S LQ+++  L E NN LS K++E
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKE 174          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.480e-29
Identity = 78/204 (38.24%), Postives = 108/204 (52.94%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTL-QANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNIPYSNQPAHSEGS 866
            MGRGK+E+KRIENK +RQVTF KRRNGLLKKAYEL++LCDAE+ALI+FSSRG+LYEF +  S   T+E+Y++ S  T   A        Q   +E  K++ + + LQ+  R                           ++RS K      ++  +Q++E  L   N  L  K+ E   A      AAE+  +  +  PA   GS
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERAEHDDQQAAEDDEM--APAPAVGGGS 202          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 7.642e-29
Identity = 88/222 (39.64%), Postives = 119/222 (53.60%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNI---PYSNQPAHSEGSFGHLHSNGTLHLGHN 911
            MGRGK+E+KRIEN  NRQVTF+KRR GLLKKA+ELSVLCDAE+ LIIFSS GKL+E+ S S SM K +E+Y++ S   +     +  + Q  Y E  ++K ++E LQ   R+                          +VRS K +  L +L  L+RKE +L + N+ L   L E  AA         E  +   P  N+ A +  +       G LHLGH+
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKVSGARI-----TEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAEQQAAVEGVQEPLLEFGVFCPPPDNKTAAAANA-------GPLHLGHH 210          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.904e-28
Identity = 75/185 (40.54%), Postives = 109/185 (58.92%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYER-CSYGTLQANHQSAKETQASY--EEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSH 803
            MGRGK+E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ ++ ++  T+E+Y++ CS  T   N  + +E  A+Y  +E  KL+++ + +Q+  R                           ++RS K    L ++   Q++E  L   N  L  K+ E+   ++ H
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN-NIRSTIERYKKACSDST---NTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQHH 181          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 8.449e-28
Identity = 76/173 (43.93%), Postives = 101/173 (58.38%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLE 776
            M RGK E+KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF SS S+ KT+E+Y++     L +NH+    +Q S +E   L  K E L+   R+                          ++R+ K +   ++  +L+ KE  L+  N +L  K E
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQK-RIQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCE 172          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.441e-27
Identity = 74/179 (41.34%), Postives = 107/179 (59.78%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQS-AKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAA 791
            M RG+ ELKRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYEF S+PS+ KT+++Y+  +Y     N+++  ++ Q   ++ + L +K EAL   +R+                          ++R  KT     ++++L+ KE  LL+ N  L  K   + AA
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYK--AYTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLRGKHRNLEAA 177          
The following BLAST results are available for this feature:
BLAST of DY256843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
AGL8_ARATH2.538e-3243.10Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SOLLC5.654e-3238.16Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL13_ARATH1.645e-3145.40Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
AGL8_SOLTU8.165e-3143.10Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SOLCO9.027e-3042.53Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD21_ORYSJ4.480e-2938.24MADS-box transcription factor 21 OS=Oryza sativa s... [more]
GGM13_GNEGN7.642e-2939.64MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
AGL11_ARATH2.904e-2840.54Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
AGL14_ARATH8.449e-2843.93Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
MAD56_ORYSJ1.441e-2741.34MADS-box transcription factor 56 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2CA07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256843 ID=DY256843; Name=DY256843; organism=Citrus clementina; type=EST; length=1280bp
GATCTGATGAAACCAAACCAATTAGCAAAATTAAAGGTACCCAACTCAGA
TCAAGTCAATTTAATCTCTCCTTTTAGGAGTGTTCTATACTAAATCTTAA
ACCTAGCTATCAAAGCAACCTGATCCCAGCTTCTTGCCCTAAACAACAAG
ATCTGCAGAAACAAAATCTACTAATTTATAATTTATTTTTTAGCCTAAAG
AAACCCAAAAAAAACAAAAAATCATCCAGCTATCCAGCACTTGTAAGTAT
ATTAATAATGGGAAGGGGAAAAGTAGAGCTGAAGAGGATAGAGAACAAAA
TAAATCGACAGGTGACTTTTGCAAAGAGAAGGAATGGATTGTTAAAGAAA
GCTTATGAGCTCTCAGTTTTGTGTGATGCTGAGGTTGCTCTTATCATCTT
CTCTAGCCGCGGGAAGCTCTATGAATTCTGCAGCAGCCCTAGTATGCACA
AGACACTTGAGAAGTATGAAAGGTGTAGTTATGGAACACTGCAAGCAAAT
CATCAATCAGCCAAAGAGACGCAGGCCAGCTACGAGGAATACATAAAACT
CAAAGAGAAACATGAGGCCCTACAGCACTTGCAAAGACAATTTTTTGGGG
AAGATTTGGGACGCTTAGGCTTAGAGGAGTTGGAACAGCTTGAGAGACAG
CTGGGCAGTTCATTGGGCCAAGTAAGGTCACTCAAGACCCGGAATCAGCT
GGATAAGCTTTCTGAACTTCAAAGGAAGGAAGAAATGTTGCTGGAAGCCA
ATAATATTTTAAGTATGAAGTTGGAGGAAATTAATGCAGCTCGGAGATCA
CATCCATGGGCAGCTGAGGAACAAAACATTCCATACAGCAACCAACCTGC
TCATTCGGAGGGTTCTTTTGGGCATTTACACAGCAATGGTACATTGCACT
TGGGTCACAATCCTGGAGTAACAGCTCATGAAAAGACTGTTGCTACTTCA
AAAACAAGATGTTCACAGCTTAATTTCCAGGCTGGGATGCTCTGAGCTAT
CAACATCCGGGAACATGCATCAACAATTTTTTAAGTGGGGAACTGGGCAC
AAAACAAAAAAAAAAGTCCTGGGGCTACTGGAATTGGTAACTTAAAGTTT
ATCGAAAAAACCAACCTGGATTTAAAGAATGGGGGCAAAGGCCATTTTTT
AATAAAGGGGTGAAAAAAAACCCAAATTGTTTAAAATTTGGAATCCCCTG
GGCTTTTCATAAATTTTTAAAAAAAAAACCGGGGAAAAACCCGTGGATAA
AAAATTTCTCAGGGGAAAAAGGGGACCCCG
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