DY256843

Overview
NameDY256843
Unique NameDY256843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.033e-25
Identity = 60/107 (56.07%), Postives = 81/107 (75.70%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQH 578
            MGRGK+E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ ++ S+  T+E+Y++ +  T  +   +    Q   +E  KL+++  +LQ+
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN-SVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQN 106          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.349e-25
Identity = 74/200 (37.00%), Postives = 100/200 (50.00%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYG-------TLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNIPY 836
            M RGK++LKRIEN ++RQVTF KRR GLLKKA ELSVLCDAE+ ++IFS +GKL+E  +  +M   ++KY +C+ G       T  A  Q         +E   LK++ E LQ      F                        Q+RS K    L ++  L+ KE +L   N  L  K+EE N +     +A  E N  Y
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKEGVLKNTNKYLLEKIEENNNSILDANFAVMETNYSY 200          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.491e-24
Identity = 75/202 (37.13%), Postives = 108/202 (53.47%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNIPYSNQPAHSEG 863
            M RGK ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEV+LIIFS +GKLYEF SS +M  T+++Y R +   +     S +  Q    E   + +K E L+  +R+                           +R+ KT+   +++ +L++KE+ L   N  LS K            W + E  + +SN+   S G
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS-NMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEK------------WGSHESEV-WSNKNQESTG 188          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.544e-24
Identity = 70/171 (40.94%), Postives = 100/171 (58.48%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMK 770
            M RGK E+KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVAL+IFS R KLYEF SS S+  T+E+Y+R     +  NH+    +Q + +E   L +K E L+  +R+                          ++R+ K +   +++ +L+ +E  L++ N  L  K
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEF-SSSSIAATIERYQR-RIKEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEK 169          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.263e-23
Identity = 66/174 (37.93%), Postives = 99/174 (56.90%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 779
            M RGKV+++RIEN ++RQVTF KRR GLLKKA ELSVLCDA+V +IIFSS+GKL+E  ++ +MH  +E+Y+    G  Q    + +  Q + +    L+E+ + LQ   R  +                        Q+R+ K +    ++  L+ KE +L EAN +L  K++E
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGG-QMEPGALQRQQVAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEANEMLQEKVKE 173          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.263e-23
Identity = 65/176 (36.93%), Postives = 97/176 (55.11%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSY--GTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 779
            MGRG++E+KRIEN  +RQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ ++ ++  T+++Y++      T  A        Q   +E  KL+ + + LQ+  +                           ++R+ K      +++ + ++E  L   N  L  K+ E
Sbjct:    1 MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAE 176          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.813e-23
Identity = 63/170 (37.06%), Postives = 98/170 (57.65%), Query Frame = 3
Query:  249 ILIMGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP-SMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANN 755
            ++IMGRGK+E+KRIENK +RQVTF+KRR GLLKK +ELSVLCDA++ LIIFSS+GKL+E+CS P SM + + +Y + +  +L       +     Y+E  K++     LQ   +++                         ++R+ K      ++  L++ E+ML + N+
Sbjct:    1 MIIMGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTGASLPVEDNRVQ----LYDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENH 166          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.798e-23
Identity = 72/190 (37.89%), Postives = 103/190 (54.21%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQN 827
            M RGK ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RGKLYEF S+ S  KT+E+Y   +   +  N    ++ +    +   L +K EAL+  +R+                           +R  KT+   +++++L+ KE  L + N  L  K +            AE++N
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA-STQKTIERYRTYTKENI-GNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQPPLSAPLTVRAEDEN 188          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 4.798e-23
Identity = 69/179 (38.55%), Postives = 99/179 (55.31%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS-PSMHKTLEKYER---CSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEI 782
            MGRGKV+++RIEN+++RQVTF+KRR GLLKKA+E++VLCD +VA I+FS++G L+ + SS  +M + LEKY+R    S G          E   SY ++IKL+ + EAL+  QR                            +RS              RKE++L+E N IL  K+ E+
Sbjct:    1 MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEEFPELEGSMSY-DHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRS--------------RKEKLLMEKNTILEKKITEL 164          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.266e-23
Identity = 64/175 (36.57%), Postives = 98/175 (56.00%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 779
            MGRGK+E+KRIEN  NRQVTF+KRR GLLKKA EL+VLCDA V ++IFSS GK++E+CS + S+ + +E+Y+  +     ++ +     Q    E  ++K + E L+   R++                         +VR+ K +    +L  L+RKE++L + N  L   + E
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHAT----NSHFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFLYRMINE 171          
The following BLAST results are available for this feature:
BLAST of DY256843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MADS3_ORYSJ1.033e-2556.07MADS-box transcription factor 3 OS=Oryza sativa su... [more]
AGL12_ARATH1.349e-2537.00Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
SOC1_ARATH1.491e-2437.13MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
AGL19_ARATH2.544e-2440.94Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
MAD33_ORYSJ1.263e-2337.93MADS-box transcription factor 33 OS=Oryza sativa s... [more]
MAD13_ORYSJ1.263e-2336.93MADS-box transcription factor 13 OS=Oryza sativa s... [more]
FBP24_PETHY2.813e-2337.06MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
MAD50_ORYSJ4.798e-2337.89MADS-box transcription factor 50 OS=Oryza sativa s... [more]
MAD20_ORYSJ4.798e-2338.55MADS-box transcription factor 20 OS=Oryza sativa s... [more]
M17_MAIZE6.266e-2336.57MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2CA07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256843 ID=DY256843; Name=DY256843; organism=Citrus clementina; type=EST; length=1280bp
GATCTGATGAAACCAAACCAATTAGCAAAATTAAAGGTACCCAACTCAGA
TCAAGTCAATTTAATCTCTCCTTTTAGGAGTGTTCTATACTAAATCTTAA
ACCTAGCTATCAAAGCAACCTGATCCCAGCTTCTTGCCCTAAACAACAAG
ATCTGCAGAAACAAAATCTACTAATTTATAATTTATTTTTTAGCCTAAAG
AAACCCAAAAAAAACAAAAAATCATCCAGCTATCCAGCACTTGTAAGTAT
ATTAATAATGGGAAGGGGAAAAGTAGAGCTGAAGAGGATAGAGAACAAAA
TAAATCGACAGGTGACTTTTGCAAAGAGAAGGAATGGATTGTTAAAGAAA
GCTTATGAGCTCTCAGTTTTGTGTGATGCTGAGGTTGCTCTTATCATCTT
CTCTAGCCGCGGGAAGCTCTATGAATTCTGCAGCAGCCCTAGTATGCACA
AGACACTTGAGAAGTATGAAAGGTGTAGTTATGGAACACTGCAAGCAAAT
CATCAATCAGCCAAAGAGACGCAGGCCAGCTACGAGGAATACATAAAACT
CAAAGAGAAACATGAGGCCCTACAGCACTTGCAAAGACAATTTTTTGGGG
AAGATTTGGGACGCTTAGGCTTAGAGGAGTTGGAACAGCTTGAGAGACAG
CTGGGCAGTTCATTGGGCCAAGTAAGGTCACTCAAGACCCGGAATCAGCT
GGATAAGCTTTCTGAACTTCAAAGGAAGGAAGAAATGTTGCTGGAAGCCA
ATAATATTTTAAGTATGAAGTTGGAGGAAATTAATGCAGCTCGGAGATCA
CATCCATGGGCAGCTGAGGAACAAAACATTCCATACAGCAACCAACCTGC
TCATTCGGAGGGTTCTTTTGGGCATTTACACAGCAATGGTACATTGCACT
TGGGTCACAATCCTGGAGTAACAGCTCATGAAAAGACTGTTGCTACTTCA
AAAACAAGATGTTCACAGCTTAATTTCCAGGCTGGGATGCTCTGAGCTAT
CAACATCCGGGAACATGCATCAACAATTTTTTAAGTGGGGAACTGGGCAC
AAAACAAAAAAAAAAGTCCTGGGGCTACTGGAATTGGTAACTTAAAGTTT
ATCGAAAAAACCAACCTGGATTTAAAGAATGGGGGCAAAGGCCATTTTTT
AATAAAGGGGTGAAAAAAAACCCAAATTGTTTAAAATTTGGAATCCCCTG
GGCTTTTCATAAATTTTTAAAAAAAAAACCGGGGAAAAACCCGTGGATAA
AAAATTTCTCAGGGGAAAAAGGGGACCCCG
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