DY256843

Overview
NameDY256843
Unique NameDY256843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.069e-22
Identity = 69/201 (34.33%), Postives = 104/201 (51.74%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNIPYSNQPAHSE 860
            M RGKV+L+RIEN ++RQVTF KRR GLLKKA ELS+LC+A++ +IIFS+ GKLY+  ++ +M + +E+Y+  S    QAN    +      E  +  +E +   + L+  +                          +RS K +  + ++  L+ KE ML  AN IL  K+ E N         A++QN  +S  P   E
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSAS--GEQANACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVEQNGLIDVGMMVADQQNGHFSTVPLLEE 199          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.069e-22
Identity = 69/201 (34.33%), Postives = 104/201 (51.74%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNIPYSNQPAHSE 860
            M RGKV+L+RIEN ++RQVTF KRR GLLKKA ELS+LC+A++ +IIFS+ GKLY+  ++ +M + +E+Y+  S    QAN    +      E  +  +E +   + L+  +                          +RS K +  + ++  L+ KE ML  AN IL  K+ E N         A++QN  +S  P   E
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSAS--GEQANACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVEQNGLIDVGMMVADQQNGHFSTVPLLEE 199          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.381e-22
Identity = 64/175 (36.57%), Postives = 96/175 (54.86%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 779
            MGRGK+E+KRIEN  NRQVTF+KRR GLLKKA EL+VLCDA V ++IFSS GK++E+CS + S+ + +E Y+  +      + +     Q  + E  +++ + E L    R+F                         +VR+ K +    +L  L+RKE +L + N+ L   + E
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQTVT----NTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSFLCRMINE 171          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.381e-22
Identity = 57/106 (53.77%), Postives = 73/106 (68.87%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQ 575
            MGRGK+E+KRIEN  +RQVTF+KRR+GLLKKA ELSVLCDAEVA+I+FS  GKL+E+ SS  M +TL +Y      +     +   E     ++  KL+EKH  LQ
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEY-SSTGMKQTLSRYGNHQSSSASKAEEDCAEVDILKDQLSKLQEKHLQLQ 105          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.304e-22
Identity = 64/131 (48.85%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGT-------LQANHQSAKETQASYEEYIKLKEKH-------------EALQHLQRQ 590
            MGRGK+E+KRIEN  +RQVTF+KRR GLLKKA+ELSVLCDAEVA+I+FS  GKL+EF SS SM KTL +Y      +          N +   E     +E   L+EKH             + LQHL++Q
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEF-SSTSMKKTLLRYGNYQISSDVPGINCKTENQEECTEVDLLKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQ 130          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 6.928e-22
Identity = 65/174 (37.36%), Postives = 97/174 (55.75%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQA-NHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLE 776
            MGR K+E+KRIENK +RQVTF+KRRNGL++KA +LSVLCDA VAL++ S+ GKLY F S  ++ K L++Y +     L+A +HQS      S+ E ++L +      +++                              R+ KT   L  +  L+ KE+ML E N +L+ ++E
Sbjct:    1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHADDLKALDHQSKALNYGSHYELLELVDSKLVGSNVKN---------VSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEENQVLASQME 165          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.633e-21
Identity = 49/72 (68.06%), Postives = 62/72 (86.11%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHKTLEKYE 470
            MGRGK+E+KRIEN  NRQVTF+KRR+G+LKKA E+SVLCDAEV ++IFSS GKLY++CS   S+ + LEKY+
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQ 72          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.633e-21
Identity = 61/157 (38.85%), Postives = 85/157 (54.14%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRK 728
            MGRGK+E+KRI+N  +RQVTF+KRR+GL KKA ELS+LCDAEV L++FSS  +LY+F SS SM   +E+Y        Q  + S+ E +   +E   L+++   LQ   RQ                           +R  K    +D++ EL RK
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS-SMKSIIERYNETKEDPHQTMNASS-EAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRK 155          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.438e-21
Identity = 64/176 (36.36%), Postives = 95/176 (53.98%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 785
            MGRGK+ ++RI++  +RQVTF+KRR GL+KKA EL++LCDAEV LIIFSS GKLY+F SS SM   +++Y +      Q  +  A E +    E   L+++  ALQ   RQ                           +R  K +    ++ EL +K  ++ + N  LS K++ I+
Sbjct:    1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS-SMKSVIDRYNKSKIEQQQLLN-PASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKVQRIH 174          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 5.865e-21
Identity = 65/175 (37.14%), Postives = 93/175 (53.14%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEI 782
            MGRGK+ ++RI+N  +RQVTF+KRRNG+ KKA EL++LCDAEV L+IFSS G+LYE+ SS SM   +++Y + S    QA      E +    E   L+++   LQ   RQ                           VR+ K    +D++ EL RK  ++ + N  L  K+  I
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEY-SSTSMKSVIDRYGK-SKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKISLI 173          
The following BLAST results are available for this feature:
BLAST of DY256843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MAD26_ORYSJ1.069e-2234.33MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI1.069e-2234.33MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD29_ORYSJ2.381e-2236.57MADS-box transcription factor 29 OS=Oryza sativa s... [more]
AGL15_ARATH2.381e-2253.77Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
AGL15_BRANA5.304e-2248.85Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
FLC_ARATH6.928e-2237.36MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
MADS2_ORYSJ2.633e-2168.06MADS-box transcription factor 2 OS=Oryza sativa su... [more]
MAD23_ORYSJ2.633e-2138.85MADS-box transcription factor 23 OS=Oryza sativa s... [more]
AGL21_ARATH3.438e-2136.36Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
MAD27_ORYSJ5.865e-2137.14MADS-box transcription factor 27 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2CA07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256843 ID=DY256843; Name=DY256843; organism=Citrus clementina; type=EST; length=1280bp
GATCTGATGAAACCAAACCAATTAGCAAAATTAAAGGTACCCAACTCAGA
TCAAGTCAATTTAATCTCTCCTTTTAGGAGTGTTCTATACTAAATCTTAA
ACCTAGCTATCAAAGCAACCTGATCCCAGCTTCTTGCCCTAAACAACAAG
ATCTGCAGAAACAAAATCTACTAATTTATAATTTATTTTTTAGCCTAAAG
AAACCCAAAAAAAACAAAAAATCATCCAGCTATCCAGCACTTGTAAGTAT
ATTAATAATGGGAAGGGGAAAAGTAGAGCTGAAGAGGATAGAGAACAAAA
TAAATCGACAGGTGACTTTTGCAAAGAGAAGGAATGGATTGTTAAAGAAA
GCTTATGAGCTCTCAGTTTTGTGTGATGCTGAGGTTGCTCTTATCATCTT
CTCTAGCCGCGGGAAGCTCTATGAATTCTGCAGCAGCCCTAGTATGCACA
AGACACTTGAGAAGTATGAAAGGTGTAGTTATGGAACACTGCAAGCAAAT
CATCAATCAGCCAAAGAGACGCAGGCCAGCTACGAGGAATACATAAAACT
CAAAGAGAAACATGAGGCCCTACAGCACTTGCAAAGACAATTTTTTGGGG
AAGATTTGGGACGCTTAGGCTTAGAGGAGTTGGAACAGCTTGAGAGACAG
CTGGGCAGTTCATTGGGCCAAGTAAGGTCACTCAAGACCCGGAATCAGCT
GGATAAGCTTTCTGAACTTCAAAGGAAGGAAGAAATGTTGCTGGAAGCCA
ATAATATTTTAAGTATGAAGTTGGAGGAAATTAATGCAGCTCGGAGATCA
CATCCATGGGCAGCTGAGGAACAAAACATTCCATACAGCAACCAACCTGC
TCATTCGGAGGGTTCTTTTGGGCATTTACACAGCAATGGTACATTGCACT
TGGGTCACAATCCTGGAGTAACAGCTCATGAAAAGACTGTTGCTACTTCA
AAAACAAGATGTTCACAGCTTAATTTCCAGGCTGGGATGCTCTGAGCTAT
CAACATCCGGGAACATGCATCAACAATTTTTTAAGTGGGGAACTGGGCAC
AAAACAAAAAAAAAAGTCCTGGGGCTACTGGAATTGGTAACTTAAAGTTT
ATCGAAAAAACCAACCTGGATTTAAAGAATGGGGGCAAAGGCCATTTTTT
AATAAAGGGGTGAAAAAAAACCCAAATTGTTTAAAATTTGGAATCCCCTG
GGCTTTTCATAAATTTTTAAAAAAAAAACCGGGGAAAAACCCGTGGATAA
AAAATTTCTCAGGGGAAAAAGGGGACCCCG
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