DY256843

Overview
NameDY256843
Unique NameDY256843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.307e-20
Identity = 71/206 (34.47%), Postives = 101/206 (49.03%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEAN-------NILS-MKLEEIN----AARRSHPWAAEEQNIPYS 839
            MGRGK+ ++RI+N  +RQVTF+KRRNGLLKKA ELS+LCDAEV L++FSS G+LYEF SS +M   +++Y       L  N  +  E +    E   L+++   LQ   +Q                           +R  K      ++ EL  K  ++ + N       N++S  KLE  N      +R    A E  + PYS
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEF-SSTNMKTVIDRYTNAKEELLGGN--ATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIELSRSLNVMSQQKLELYNKLQACEQRGATDANESSSTPYS 203          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.307e-20
Identity = 74/234 (31.62%), Postives = 116/234 (49.57%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP-SMHKTLEKYERCSYGTLQANHQSA---KETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANN-----ILSMKLEEINAARRSH-PWAAEEQNIPYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAH 929
            MGRGK+E+KRIEN  +RQVTF+KRR+GL+KK +ELSVLCDA++ LI+FS++GKL E+C+ P SM + +++Y +   G L      A    +     +E  ++KE+   LQ   +++                         +VR+ K     +++  L+R E ML + N      ++S +++        H      E  +    QP  +E  F        LHLG  P +  H
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAK-GILPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGDDLSTVRFEELTELEKLLDQSLNKVRARKLELLHEQMENLKRTEFMLEKENQEMYHWLMSNQIQRQAEVEHHHQQQVMTELKLVEQQQPLMNEFPF----FGEDLHLGTLPLLDTH 229          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.229e-20
Identity = 75/220 (34.09%), Postives = 106/220 (48.18%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNIPYSNQPAHSEGSFGHLHSNGTLHLGHNPG 917
            M R + E+KRIE+   RQVTF+KRR GL KKA ELSVLCDA+VALI+FSS GKL  F SS SM++ ++KY   S   L    Q + +    + +Y  L E+        RQ                          +V   K +  ++++SELQRK   L E N  L  ++ +I+ A +      + +N     Q   SE     LHS  +    ++ G
Sbjct:    1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASS-SMNEIIDKYNTHS-NNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVSQISPAEKQ---VVDTENFVTEGQ--SSESVMTALHSGSSQSQDNDDG 213          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.469e-20
Identity = 65/179 (36.31%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPS-MHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAA 791
            MGRGK+E+K+IEN+  RQVTF+KRR GL+KK  ELS+LCDA + LI+FS+ GKL EFCS  + M + +++Y   +   L  +H   ++    + E   L+ +   L+   R F                         +VR  K      +L  L RK  ML E NN +   L E  AA
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTNGLRLPDHHDDQEQL---HHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNMYRWLHEHRAA 176          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.469e-20
Identity = 61/168 (36.31%), Postives = 90/168 (53.57%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNIL 761
            M R K+++++I+N   RQVTF+KRR GL KKA ELSVLCDA+VALIIFSS GKL+EFCSS SM + LE++   S    + +  S +       ++ ++ ++     H  RQ                          +V   K+   + ++SELQ+K   L++ N  L
Sbjct:    1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS-SMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRL 167          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.106e-19
Identity = 65/207 (31.40%), Postives = 102/207 (49.28%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLE-------EINAARRSHPWAAEEQNIPYSNQPAHS 857
            MGRGK+ +KRI+N +NRQVTF+KRR GL+KKA EL++LCDA+V LI+FS  G+LY+F SS SM   +E+Y+       +  +  + E +    E   L+++ + L H  RQ                           +R+ K +   +++ +L  K  ++ + N+ L  K         E++    S    + EQ    S  P  S
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDF-SSSSMKSIIERYQEAGEEHCRLLNPMS-EAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRKKFNIAHQRNIELHKKLNSGESTSSEQVTRSSKDPGES 205          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.445e-19
Identity = 65/184 (35.33%), Postives = 102/184 (55.43%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-CSSPSMHKTLEKYERCSYGTL-QANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSH 803
            MGRGK+E+KRIEN  NR VTF+KRRNGL+KKA E++VLCDA+VALIIF+S GK+ ++ C S  +   L++Y++ S   L  A H++         E  ++K+++++LQ   R                           +VR     +Q++ L   +R E+M+ E    L+ +L++   A  S+
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHENLS------NEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVRD----HQMEILISKRRNEKMMAEEQRQLTFQLQQQEMAIASN 174          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.218e-19
Identity = 46/75 (61.33%), Postives = 62/75 (82.67%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHKTLEKYERCS 479
            MGRGK+E+KRIEN  NRQVT++KRRNG++KKA E+SVLCDA V++IIF+S GK++EFCS S ++   L+ Y + S
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLS 75          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.218e-19
Identity = 58/172 (33.72%), Postives = 91/172 (52.91%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKL 773
            MGR KVE+KRIENK +RQVTF+KRRNGL++KA +LS+LC++ +A+++ S  GKLY+  S  +M K +++YE        A+   A +       Y+ LK   E L+ +Q +                            R+ KT   + ++  LQ+ E +L E N  L+ ++
Sbjct:    1 MGRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYE-----IHHADELEALDLAEKTRNYLPLK---ELLEIVQSKLEESNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTENLLREENQTLASQV 164          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.203e-19
Identity = 50/108 (46.30%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHKTLEKYERCSYGTL-QANHQSAKETQASYEEYIKLKEKHEALQ 575
            MGRGK+E+KRIEN  NRQVT++KRRNG++KKA E++VLCDA+V+LIIF + GK++E+CS S ++   L+ Y++ S   L  A H++         E  ++K++++ +Q
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLS------NEIDRIKKENDNMQ 102          
The following BLAST results are available for this feature:
BLAST of DY256843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MAD57_ORYSJ1.307e-2034.47MADS-box transcription factor 57 OS=Oryza sativa s... [more]
DEF21_ANTMA1.307e-2031.62MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
MAD22_ORYSJ2.229e-2034.09MADS-box transcription factor 22 OS=Oryza sativa s... [more]
TT16_ARATH8.469e-2036.31Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
SVP_ARATH8.469e-2036.31MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
MAD25_ORYSJ1.106e-1931.40MADS-box transcription factor 25 OS=Oryza sativa s... [more]
PIST_ARATH1.445e-1935.33Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
GLOB_ANTMA3.218e-1961.33Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
AGL31_ARATH3.218e-1933.72Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
MADS2_PETHY4.203e-1946.30Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2CA07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256843 ID=DY256843; Name=DY256843; organism=Citrus clementina; type=EST; length=1280bp
GATCTGATGAAACCAAACCAATTAGCAAAATTAAAGGTACCCAACTCAGA
TCAAGTCAATTTAATCTCTCCTTTTAGGAGTGTTCTATACTAAATCTTAA
ACCTAGCTATCAAAGCAACCTGATCCCAGCTTCTTGCCCTAAACAACAAG
ATCTGCAGAAACAAAATCTACTAATTTATAATTTATTTTTTAGCCTAAAG
AAACCCAAAAAAAACAAAAAATCATCCAGCTATCCAGCACTTGTAAGTAT
ATTAATAATGGGAAGGGGAAAAGTAGAGCTGAAGAGGATAGAGAACAAAA
TAAATCGACAGGTGACTTTTGCAAAGAGAAGGAATGGATTGTTAAAGAAA
GCTTATGAGCTCTCAGTTTTGTGTGATGCTGAGGTTGCTCTTATCATCTT
CTCTAGCCGCGGGAAGCTCTATGAATTCTGCAGCAGCCCTAGTATGCACA
AGACACTTGAGAAGTATGAAAGGTGTAGTTATGGAACACTGCAAGCAAAT
CATCAATCAGCCAAAGAGACGCAGGCCAGCTACGAGGAATACATAAAACT
CAAAGAGAAACATGAGGCCCTACAGCACTTGCAAAGACAATTTTTTGGGG
AAGATTTGGGACGCTTAGGCTTAGAGGAGTTGGAACAGCTTGAGAGACAG
CTGGGCAGTTCATTGGGCCAAGTAAGGTCACTCAAGACCCGGAATCAGCT
GGATAAGCTTTCTGAACTTCAAAGGAAGGAAGAAATGTTGCTGGAAGCCA
ATAATATTTTAAGTATGAAGTTGGAGGAAATTAATGCAGCTCGGAGATCA
CATCCATGGGCAGCTGAGGAACAAAACATTCCATACAGCAACCAACCTGC
TCATTCGGAGGGTTCTTTTGGGCATTTACACAGCAATGGTACATTGCACT
TGGGTCACAATCCTGGAGTAACAGCTCATGAAAAGACTGTTGCTACTTCA
AAAACAAGATGTTCACAGCTTAATTTCCAGGCTGGGATGCTCTGAGCTAT
CAACATCCGGGAACATGCATCAACAATTTTTTAAGTGGGGAACTGGGCAC
AAAACAAAAAAAAAAGTCCTGGGGCTACTGGAATTGGTAACTTAAAGTTT
ATCGAAAAAACCAACCTGGATTTAAAGAATGGGGGCAAAGGCCATTTTTT
AATAAAGGGGTGAAAAAAAACCCAAATTGTTTAAAATTTGGAATCCCCTG
GGCTTTTCATAAATTTTTAAAAAAAAAACCGGGGAAAAACCCGTGGATAA
AAAATTTCTCAGGGGAAAAAGGGGACCCCG
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