DY256843

Overview
NameDY256843
Unique NameDY256843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.489e-19
Identity = 53/107 (49.53%), Postives = 76/107 (71.03%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCS-YGTLQANHQSAKETQASYEEYIKLKEKHEALQ 575
            MGRGK+E+KRIEN  NRQVT++KRRNG+LKKA E+SVLCDA V++IIF+S GK++EF SS S+   L++Y + +    L A H++         E  K+K+ ++ +Q
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF-SSTSLVDILDQYHKLTGRRLLDAKHENLD------NEINKVKKDNDNMQ 100          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.169e-19
Identity = 53/107 (49.53%), Postives = 76/107 (71.03%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTL-QANHQSAKETQASYEEYIKLKEKHEALQ 575
            MGRGK+E+KRIEN  NRQVT++KRRNG+LKKA E+SVLCDA V++IIF+S GK++EF SS S+   L++Y + +   L  A H++         E  K+K+ ++ +Q
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF-SSTSLVDILDQYHKLTGRRLWDAKHENLD------NEINKVKKDNDNMQ 100          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 9.363e-19
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS------PSMHKTLEKYE 470
            MGRGK+E+KRIEN  NRQVTF+KRR G+LKKA E+ VLCDAEV ++IFSS GKL ++C+       P + + LEKY+
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQ 77          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.223e-18
Identity = 62/176 (35.23%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 785
            M R K+++K+I+N   RQVTF+KRR GL KKA ELSVLCDA+VALIIFSS GKL+++ SS SM + LE+ +  S    + +  S +        Y +L ++     H  RQ                          +V   K    + ++++LQ+K   L+E N  L  ++ EI+
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDY-SSSSMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQVMEIS 175          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.223e-18
Identity = 72/237 (30.38%), Postives = 118/237 (49.79%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNIPYSNQPAHSEGSFGHLHSNGTLHLGHNPGVTAHEKTVATSKTRCSQ 968
            MGRGK+ +++I++  +RQVTF+KRR GL+KKA EL++LCDAEV LIIFS+  KLY+F SS S+  T+E++        Q     A E +    E   L+++  +LQ   RQ                           +R  + +   +++ EL RK  ++   N  LS K++ I+           ++N+    +      ++G  ++NG   LGH+  V A  ++ A  + + SQ
Sbjct:    1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS-SVKSTIERFNTAKMEE-QELMNPASEVKFWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRKRNLVHHENLELSRKVQRIH-----------QENVELYKK------AYGTSNTNG---LGHHELVDAVYESHAQVRLQLSQ 215          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.597e-18
Identity = 48/113 (42.48%), Postives = 73/113 (64.60%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP-SMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQF 593
            MGRG+VELK+IEN  NRQVTF+KRR GLLKKA EL++LCDA++ +I+FS  GK+YE+ S P  +    ++Y +          +     Q   +E  ++K+++  L+ + RQ+
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAP----STRFEEMDVQQRIIQEMTRMKDENNRLRIIMRQY 109          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.597e-18
Identity = 58/177 (32.77%), Postives = 93/177 (52.54%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSA-KETQASYEEYIKLKEKHEALQ-HLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEI 782
            MG+GK+E+KRIE+   RQVTF+KRR G LKKA EL+VLCDA+V +++FS +GKL++FCS P +   +E + R    T     Q   ++ +    E  +L+ + + L+  L+RQ                          +V + K      +L +++R  + + E NN L   + +I
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVI--LMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFLCRMVTKI 175          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 2.724e-18
Identity = 44/73 (60.27%), Postives = 60/73 (82.19%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS-SPSMHKTLEKYER 473
            MGRGK+E+KRIEN  NRQVT++KRR G++KKA EL+VLCDA+VA+I+FSS GK +EFCS S  +    ++Y++
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQ 73          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 4.647e-18
Identity = 64/192 (33.33%), Postives = 94/192 (48.96%), Query Frame = 3
Query:  264 RGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQA-SYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNIPY 836
            R ++ ++RI+N   RQVTF+KRR GL KKA ELS+LCDAEV L++FS+ GKL++F S+ SM + +++Y   S  TLQ    S  + Q        +LKE+        RQ                         G V   K++  LD++  L+RK   L+E N  L  +L+    +R        +  I Y
Sbjct:   22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFAST-SMEQIIDRYNSHS-KTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQLQVSRMSRMEEMQPGPDSEIVY 211          
BLAST of DY256843 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.926e-18
Identity = 72/229 (31.44%), Postives = 109/229 (47.60%), Query Frame = 3
Query:  258 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTL-EKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFXXXXXXXXXXXXXXXXXXXXXXXGQVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARRSHPWAAEEQNIPYSN----------------QPAHSE-GSFGHLHSNG 890
            M RGK+++KRIEN+ NRQVT++KRRNGL KKA EL+VLCDA+V++I+ SS GKL+EF S     K L + Y++     L  +H    +     E+  KLKE +  L+   RQ                           +R  K +   +++   ++K   + E +  L ++ +    AR+  P+   EQ   Y++                QP H +     HLHS G
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKTVGVDLWNSHYEKMQ-----EQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRNLLLEFD----ARQEDPYGLVEQEGDYNSVLGFPNGGHRILALRLQPNHHQPNHHHHLHSGG 220          
The following BLAST results are available for this feature:
BLAST of DY256843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
FBP1_PETHY5.489e-1949.53Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
GLOB_TOBAC7.169e-1949.53Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
MADS4_ORYSJ9.363e-1959.74MADS-box transcription factor 4 OS=Oryza sativa su... [more]
JOIN_SOLLC1.223e-1835.23MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
AGL17_ARATH1.223e-1830.38Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
MAD31_ORYSJ1.597e-1842.48MADS-box transcription factor 31 OS=Oryza sativa s... [more]
MAD30_ORYSJ1.597e-1832.77MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MAD16_ORYSJ2.724e-1860.27MADS-box transcription factor 16 OS=Oryza sativa s... [more]
MAD47_ORYSJ4.647e-1833.33MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MADS1_PETHY7.926e-1831.44Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA2CA07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256843 ID=DY256843; Name=DY256843; organism=Citrus clementina; type=EST; length=1280bp
GATCTGATGAAACCAAACCAATTAGCAAAATTAAAGGTACCCAACTCAGA
TCAAGTCAATTTAATCTCTCCTTTTAGGAGTGTTCTATACTAAATCTTAA
ACCTAGCTATCAAAGCAACCTGATCCCAGCTTCTTGCCCTAAACAACAAG
ATCTGCAGAAACAAAATCTACTAATTTATAATTTATTTTTTAGCCTAAAG
AAACCCAAAAAAAACAAAAAATCATCCAGCTATCCAGCACTTGTAAGTAT
ATTAATAATGGGAAGGGGAAAAGTAGAGCTGAAGAGGATAGAGAACAAAA
TAAATCGACAGGTGACTTTTGCAAAGAGAAGGAATGGATTGTTAAAGAAA
GCTTATGAGCTCTCAGTTTTGTGTGATGCTGAGGTTGCTCTTATCATCTT
CTCTAGCCGCGGGAAGCTCTATGAATTCTGCAGCAGCCCTAGTATGCACA
AGACACTTGAGAAGTATGAAAGGTGTAGTTATGGAACACTGCAAGCAAAT
CATCAATCAGCCAAAGAGACGCAGGCCAGCTACGAGGAATACATAAAACT
CAAAGAGAAACATGAGGCCCTACAGCACTTGCAAAGACAATTTTTTGGGG
AAGATTTGGGACGCTTAGGCTTAGAGGAGTTGGAACAGCTTGAGAGACAG
CTGGGCAGTTCATTGGGCCAAGTAAGGTCACTCAAGACCCGGAATCAGCT
GGATAAGCTTTCTGAACTTCAAAGGAAGGAAGAAATGTTGCTGGAAGCCA
ATAATATTTTAAGTATGAAGTTGGAGGAAATTAATGCAGCTCGGAGATCA
CATCCATGGGCAGCTGAGGAACAAAACATTCCATACAGCAACCAACCTGC
TCATTCGGAGGGTTCTTTTGGGCATTTACACAGCAATGGTACATTGCACT
TGGGTCACAATCCTGGAGTAACAGCTCATGAAAAGACTGTTGCTACTTCA
AAAACAAGATGTTCACAGCTTAATTTCCAGGCTGGGATGCTCTGAGCTAT
CAACATCCGGGAACATGCATCAACAATTTTTTAAGTGGGGAACTGGGCAC
AAAACAAAAAAAAAAGTCCTGGGGCTACTGGAATTGGTAACTTAAAGTTT
ATCGAAAAAACCAACCTGGATTTAAAGAATGGGGGCAAAGGCCATTTTTT
AATAAAGGGGTGAAAAAAAACCCAAATTGTTTAAAATTTGGAATCCCCTG
GGCTTTTCATAAATTTTTAAAAAAAAAACCGGGGAAAAACCCGTGGATAA
AAAATTTCTCAGGGGAAAAAGGGGACCCCG
back to top