DY256862

Overview
NameDY256862
Unique NameDY256862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1249
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: CSN5_ASHGO (COP9 signalosome complex subunit 5 OS=Ashbya gossypii GN=RRI1 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 2.435e-48
Identity = 94/196 (47.96%), Postives = 132/196 (67.35%), Query Frame = 3
Query:  210 AQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFK 797
            +Q + QQE  W  DP YF++  +SALA +K++ HA  GG +EV+G++ G    + I+V+D++ LPVEGTETRVNAQ ++YEY V Y +T    G     VGWYHSHPGYGCWLSGID  TQ LNQ FQ+P+LA+V+DP R+ ++G ++IGAFRT PE        +S +     +    +G H  +YY L+++YF+
Sbjct:   54 SQVRVQQEL-WKQDPTYFQKAALSALACMKILRHAFDGGDMEVLGMLLGYVQDEMIVVVDSYRLPVEGTETRVNAQMESYEYTVQYLETAVPEGLA--IVGWYHSHPGYGCWLSGIDAETQTLNQNFQDPYLAIVVDPKRSKASGVIDIGAFRTMPE--TADTRSVSSH-----SNASRYGHHSARYYELEVSYFE 239          
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: CSN5_KLULA (COP9 signalosome complex subunit 5 OS=Kluyveromyces lactis GN=RRI1 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.691e-41
Identity = 90/208 (43.27%), Postives = 129/208 (62.02%), Query Frame = 3
Query:  111 WELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLN 734
            W   N  ++ ET   +S++D+S +  +    +    +         +P +F++  IS LA  KM+ HA  GG IEVMG++ G T  D I+V D ++LPV+GTETRVNA  ++YEYMV Y   +    + +  VGWYHSHPGYGCWLS ID+ TQ LNQ +Q+P+LA+V+DP +++S   ++IGAFRT P   K  +E +  Y   PLN
Sbjct:   17 WIQANEDINTETS-LSSSSDSSTTIPVI---DHLPARIPYATDLKRNPCHFQKCLISRLATTKMLSHAVDGGDIEVMGMLVGYTSNDMIVVKDCYSLPVQGTETRVNAHMESYEYMVQY--LDAFVTKEDKIVGWYHSHPGYGCWLSNIDIQTQSLNQNYQDPYLAIVVDPKKSLSGNTLDIGAFRTLPS--KDNNEHVDYY---PLN 213          
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: CSN5_CANGA (COP9 signalosome complex subunit 5 OS=Candida glabrata GN=RRI1 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.984e-38
Identity = 82/176 (46.59%), Postives = 111/176 (63.07%), Query Frame = 3
Query:  246 NDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY--SQTNKQAGRLE---NAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTI----PLNKIED 746
            N P +++ V +S LA  K++ HA  GG IEVMG++ G   G+  ++ D F LPVEGTET VNA  ++YEYMV +      +   R E   N +GWYHSHPGY CWLS ID+ TQ LNQQ Q+P+LA+V+DP ++ +  KV IG+FRTY +  +  D    E  T      LNK+E+
Sbjct:   66 NSPLFYQNVLLSKLACSKILCHATKGGNIEVMGMLLGNVIGNTFVIFDCFELPVEGTETMVNAHMESYEYMVQFYHEMVERSYTRNEENLNIIGWYHSHPGYDCWLSNIDMQTQSLNQQHQDPYLAIVVDPHKSKNDQKVRIGSFRTYQD--QNDDTNFYELNTTVFDSELNKLEN 239          
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: CSN5_YEAST (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae GN=RRI1 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 2.614e-34
Identity = 76/163 (46.63%), Postives = 102/163 (62.58%), Query Frame = 3
Query:  213 QTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY----------SQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 671
            +TK +Q+     D   +  V IS L+  K+  +A  GG IE+MG++ G T  D I+VMD F LPV GTETRVNAQ ++YEYMV Y                 G   N VGW+HSHPGY CWLS ID+ TQ LNQ+FQ+P++A+V+DP +++    + +GAFRT
Sbjct:   54 KTKLKQQSS--TDIPSYTHVLISKLSCEKITHYAVRGGNIEIMGILMGFTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRT 214          
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS7 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRI1 PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 2.614e-34
Identity = 76/163 (46.63%), Postives = 102/163 (62.58%), Query Frame = 3
Query:  213 QTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY----------SQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 671
            +TK +Q+     D   +  V IS L+  K+  +A  GG IE+MG++ G T  D I+VMD F LPV GTETRVNAQ ++YEYMV Y                 G   N VGW+HSHPGY CWLS ID+ TQ LNQ+FQ+P++A+V+DP +++    + +GAFRT
Sbjct:   54 KTKLKQQSS--TDIPSYTHVLISKLSCEKITHYAVRGGNIEIMGILMGFTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRT 214          
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS1 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RRI1 PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 2.614e-34
Identity = 76/163 (46.63%), Postives = 102/163 (62.58%), Query Frame = 3
Query:  213 QTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY----------SQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 671
            +TK +Q+     D   +  V IS L+  K+  +A  GG IE+MG++ G T  D I+VMD F LPV GTETRVNAQ ++YEYMV Y                 G   N VGW+HSHPGY CWLS ID+ TQ LNQ+FQ+P++A+V+DP +++    + +GAFRT
Sbjct:   54 KTKLKQQSS--TDIPSYTHVLISKLSCEKITHYAVRGGNIEIMGILMGFTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRT 214          
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: PSDE_DICDI (26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium discoideum GN=psmD14 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.290e-30
Identity = 89/210 (42.38%), Postives = 117/210 (55.71%), Query Frame = 3
Query:  252 PHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKT-DGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHC------KQYYSLDITYFKSSL*CHLLDLLGNKYWVNTL 857
            P   + + IS+LALLKM+ HAR+G  +EVMGLM G+  D   I V+D FA+P  GT   V A    ++  M+D     KQ GR E  +GWYHSHPG+GCWLS +DV+TQ   +Q Q   +AVV+DP ++V  GKV I AFRT      P  EP     T  L  ++D  +        + YYS+ I Y K+ L   +L  L  K W   L
Sbjct:   25 PDTAETIHISSLALLKMLQHARAGVPLEVMGLMLGELIDEYTIRVIDVFAMPQSGTSVSVEAIDPVFQTKMLDML---KQTGRDEIVIGWYHSHPGFGCWLSSVDVNTQQSFEQLQSRAVAVVVDPLQSV-RGKVVIDAFRTIKT--SPTAEP--RQITSNLGHLQDPSIQALIHGLNRNYYSIAINYRKNELEQKMLLNLHKKKWTEGL 226          
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: PSDE_ARATH (26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis thaliana GN=RPN11 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.641e-28
Identity = 82/206 (39.81%), Postives = 116/206 (56.31%), Query Frame = 3
Query:  264 KRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTY-PEGYKPPDEPISEYQTIPLNKIEDFGVHC------KQYYSLDITYFKSSL*CHLLDLLGNKYWVNTL 857
            ++V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V+ +A  + +  +     KQ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   +  +AVV+DP ++V  GKV I AFR+  P+      EP     T  L  +    +        + YYS+ I Y K+ L   +L  L  K W + L
Sbjct:   28 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRSINPQTIMLGQEP--RQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGL 228          
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: PSDE_DROME (26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila melanogaster GN=Rpn11 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.143e-28
Identity = 86/207 (41.55%), Postives = 115/207 (55.56%), Query Frame = 3
Query:  264 KRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTY-PEGYKPPDEPISEYQTIPLNKIEDFGVHC------KQYYSLDITYFKSSL*CHLLDLLGNKYWVNTL 857
            ++V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   E  +AVV+DP ++V  GKV I AFR   P       EP     T  L  ++   V        + YYS+ I Y K+ L   +L  L  K W + L
Sbjct:   27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK-GKVVIDAFRLINPNMLVLGQEP--RQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWKDGL 227          
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: RPN11_ASHGO (26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii GN=RPN11 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.799e-28
Identity = 84/204 (41.18%), Postives = 115/204 (56.37%), Query Frame = 3
Query:  270 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEG----YKPPDEPISEYQTIPLNKIEDFGVH--CKQYYSLDITYFKSSL*CHLLDLLGNKYWVNTL 857
            V IS+LALLKM+ H+R+G  +EVMGLM G   D   + V+D FA+P  GT   V A  D ++  M+D     KQ GR +  VGWYHSHPG+GCWLS +DV TQ   +Q     +AVV+DP ++V  GKV I AFR          + P +  S    +    I+   +H   + YYSL+I Y K+S   ++L  L  + W + L
Sbjct:   32 VYISSLALLKMLKHSRAGVPMEVMGLMLGDFVDEYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDML---KQTGRDQMVVGWYHSHPGFGCWLSSVDVDTQRSFEQLNSRAVAVVVDPIQSVK-GKVVIDAFRLISPATVVRNQEPRQTTSNVGLLNKPNIQSL-IHGLNRHYYSLNIDYHKTSAELNMLMNLHKEQWQSGL 230          
The following BLAST results are available for this feature:
BLAST of DY256862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CSN5_ASHGO2.435e-4847.96COP9 signalosome complex subunit 5 OS=Ashbya gossy... [more]
CSN5_KLULA1.691e-4143.27COP9 signalosome complex subunit 5 OS=Kluyveromyce... [more]
CSN5_CANGA2.984e-3846.59COP9 signalosome complex subunit 5 OS=Candida glab... [more]
CSN5_YEAST2.614e-3446.63COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
CSN5_YEAS72.614e-3446.63COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
CSN5_YEAS12.614e-3446.63COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
PSDE_DICDI2.290e-3042.3826S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_ARATH1.641e-2839.8126S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_DROME2.143e-2841.5526S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_ASHGO2.799e-2841.1826S proteasome regulatory subunit RPN11 OS=Ashbya ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2CE05ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256862 ID=DY256862; Name=DY256862; organism=Citrus clementina; type=EST; length=1249bp
GGGTGTTGTTGGTGTTCGTTTTGTTTGTTGTTCCAGACAGTGTAGGGTGT
AGGCAGAGATGGAGAGAAAACAACATAGTATCGATGGACTCGTCAATAGC
GCAAAAGACATGGGAACTGGAAAACAACATAGTATCGATGGAGACACCGC
CGACAAACTCAACAGCCGACACGTCAGCATCGGACGCGATTTTCTTCTAC
GACGAAGGGGCGCAGACCAAGTTCCAGCAAGAGAAGCCCTGGGTCAATGA
CCCTCACTACTTCAAGCGCGTGAAGATCTCCGCACTCGCCCTCCTCAAGA
TGGTCGTCCATGCGCGATCCGGTGGGACCATCGAGGTCATGGGCCTTATG
CAAGGCAAAACCGACGGCGACGCCATCATTGTCATGGACGCCTTTGCTTT
GCCCGTTGAAGGTACCGAAACCAGGGTTAATGCTCAGGCCGATGCTTATG
AATATATGGTCGATTATTCCCAAACCAACAAACAGGCCGGACGTCTGGAG
AATGCTGTTGGGTGGTACCATTCACATCCTGGCTATGGATGCTGGCTTTC
GGGTATTGATGTTTCAACTCAAATGCTTAATCAGCAGTTTCAGGAGCCAT
TTTTGGCTGTTGTGATTGATCCTACTAGGACTGTTTCTGCTGGGAAAGTT
GAGATTGGAGCTTTCAGGACGTATCCTGAAGGATACAAGCCTCCGGATGA
ACCCATCTCTGAGTATCAGACCATTCCTTTGAATAAGATTGAAGACTTTG
GTGTGCATTGTAAACAGTATTATTCATTGGATATTACTTATTTTAAGTCC
TCTCTTTGATGCCATCTTTTGGATCTGCTGGGGAACAAGTACTGGGTGAA
TACTCTTTTCTCTTCCCCTTGCTTGGTAATGGGGACTATGTTCCAGGACA
ATTTCGGATTTTACCTAAAAACTGGAACAAGCTGAAAATCAATTGGCCTC
ATTCCCCCTTTGGGCCCCTAAAAACACCCCCTCCAAAAAGGAAGGAGAAG
AATTCCAAGTCTGCTAAAAATCCCCTCGGGACAGTGCAAAAAAAAACGTT
TAAACAGGGTTCGGGGGTCTAAGGTCCAAGGGTTTTATAAAAAAAATTCT
TTTTTTATTTTTTTTTTTAAAAAAATCCCCCCAAAAAACCCCCCCCCGGG
GGGCCCCCTTTCAAACCCCCCTAAACCCTTTTTGTTATATAGAAATCCCC
TGTTAATTTTTTTTTCCCACATCTTATTATTAGGGGGGGGGGGGACCCC
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