DY256862

Overview
NameDY256862
Unique NameDY256862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1249
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: PSDE_MOUSE (26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus GN=Psmd14 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 4.775e-28
Identity = 84/206 (40.78%), Postives = 115/206 (55.83%), Query Frame = 3
Query:  264 KRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGY----KPPDEPISEYQTIPLNKIEDFGVH--CKQYYSLDITYFKSSL*CHLLDLLGNKYWVNTL 857
            ++V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   E  +AVV+DP ++V  GKV I AFR            P +  S    +    I+   +H   + YYS+ I Y K+ L   +L  L  K W+  L
Sbjct:   29 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK-GKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQAL-IHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGL 229          
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: PSDE_HUMAN (26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens GN=PSMD14 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.775e-28
Identity = 84/206 (40.78%), Postives = 115/206 (55.83%), Query Frame = 3
Query:  264 KRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGY----KPPDEPISEYQTIPLNKIEDFGVH--CKQYYSLDITYFKSSL*CHLLDLLGNKYWVNTL 857
            ++V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   E  +AVV+DP ++V  GKV I AFR            P +  S    +    I+   +H   + YYS+ I Y K+ L   +L  L  K W+  L
Sbjct:   29 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK-GKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQAL-IHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGL 229          
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: YPT5_CAEEL (Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans GN=F37A4.5 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 8.145e-28
Identity = 83/219 (37.90%), Postives = 112/219 (51.14%), Query Frame = 3
Query:  243 VNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYP------EGYKPPDEPISEYQTIP-------LNKIEDFGVHCKQYYSLDITYFKSSL*CHLLDLLGNKYWVNTL 857
            ++ P   + V IS+LALLKM+ HARSG  +EVMGLM G   D   I V D FA+P  GT   V +    Y+    +    K  GR EN VGWYHSHPG+GCWLS +DV+TQ   +      +AVV+DP ++V  GKV + AFR+            P  EP      +        ++ +   G    +YYSL++ Y   S    +L  L  K W + L
Sbjct:   20 LDHPDTSETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTVESVDPVYQ--TKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPIQSVK-GKVMLDAFRSVNPLNLQIRPLAPTAEPRQTTSNLGHLTKPSLISVVHGLGT---KYYSLNVAYRMGSNEQKMLMCLNKKSWYDQL 232          
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: PSDE_CAEEL (26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis elegans GN=rpn-11 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 8.145e-28
Identity = 82/205 (40.00%), Postives = 113/205 (55.12%), Query Frame = 3
Query:  270 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTY-PEGYKPPDEPISEYQTIPLNKIEDFGVHC------KQYYSLDITYFKSSL*CHLLDLLGNKYWVNTL 857
            V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   +  +AVV+DP ++V  GKV I AFRT  P+      EP     T  L  ++   +        + YYS+ I Y    L   +L  L    W++ +
Sbjct:   33 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPIQSVK-GKVVIDAFRTINPQSMALNQEP--RQTTSNLGHLQKPSIQALIHGLNRHYYSIPIAYRTHDLEQKMLLNLNKLSWMDAV 231          
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: RPN11_YEAST (26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae GN=RPN11 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.064e-27
Identity = 83/204 (40.69%), Postives = 115/204 (56.37%), Query Frame = 3
Query:  270 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEG----YKPPDEPISEYQTIPLNKIEDFGVH--CKQYYSLDITYFKSSL*CHLLDLLGNKYWVNTL 857
            V IS++ALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A  D ++  M+D     KQ GR +  VGWYHSHPG+GCWLS +DV+TQ   +Q     +AVV+DP ++V  GKV I AFR    G       P +  S    +    I+   +H   + YYSL+I Y K++    +L  L  + W + L
Sbjct:   27 VYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDML---KQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVK-GKVVIDAFRLIDTGALINNLEPRQTTSNTGLLNKANIQAL-IHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGL 225          
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: RPN11_CANGA (26S proteasome regulatory subunit RPN11 OS=Candida glabrata GN=RPN11 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.389e-27
Identity = 83/204 (40.69%), Postives = 115/204 (56.37%), Query Frame = 3
Query:  270 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEG----YKPPDEPISEYQTIPLNKIEDFGVH--CKQYYSLDITYFKSSL*CHLLDLLGNKYWVNTL 857
            V IS++ALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A  D ++  M+D     KQ GR +  VGWYHSHPG+GCWLS +DV+TQ   +Q     +AVV+DP ++V  GKV I AFR    G     + P +  S    +    I+   +H   + YYSL+I Y K+     +L  L  + W + L
Sbjct:   27 VYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVNVVDVFAMPQSGTGVSVEAVDDVFQARMMDML---KQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNNRAVAVVVDPIQSVK-GKVVIDAFRLIDTGALINNQEPRQTTSNSGLMNKANIQAL-IHGLNRHYYSLNIDYHKTPAETKMLLNLHKEQWQSGL 225          
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: RPN11_SCHPO (26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces pombe GN=rpn11 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 5.280e-27
Identity = 87/206 (42.23%), Postives = 112/206 (54.37%), Query Frame = 3
Query:  270 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTY-PEGYKPPDEPISEYQTI-PLNK------IEDFGVHCKQYYSLDITYFKSSL*CHLLDLLGNKYWVNTL 857
            V IS+LALLKM+ H R G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLS +D++TQ   +Q     +AVV+DP ++V  GKV I AFR   P       EP      +  +NK      I   G H   YYSL I Y K+ L   +L  L  + W + L
Sbjct:   30 VYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVDPVFQKNMMDML---KQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDPIQSVK-GKVVIDAFRLINPSTLMMGQEPRQTTSNLGHINKPSIQALIHGLGRH---YYSLRINYKKTELEEIMLLNLHKQPWAHGL 228          
BLAST of DY256862 vs. ExPASy Swiss-Prot
Match: RPN11_ENCCU (26S proteasome regulatory subunit RPN11 OS=Encephalitozoon cuniculi GN=RPN11 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.469e-26
Identity = 82/206 (39.81%), Postives = 113/206 (54.85%), Query Frame = 3
Query:  270 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPE-----GYKPPD--EPISEYQTIPLNKIEDFGVH--CKQYYSLDITYFKSSL*CHLLDLLGNKYWVNTL 857
            V+IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V +    ++  ++     K  GR E  VGWYHSHPG+GCWLS +D+STQ   ++  +  +AVV+DP ++V  GKV I AFR         G +P      I   +T  L  I    +H   K YYS +IT  K+     +L  L  K W + L
Sbjct:   21 VQISSLALLKMLKHGRAGIPLEVMGLMLGEFVDEYTVKVVDVFAMPQSGTNVTVESVDPIFQ--MEMMSILKATGRHETVVGWYHSHPGFGCWLSTVDISTQQSFEKLCKRAVAVVVDPIQSVK-GKVVIDAFRLIDNQLGVLGGEPRQVTSNIGYLKTPTLISI----IHGLNKHYYSFNITCRKNDFEQKMLLNLHRKTWADNL 219          
The following BLAST results are available for this feature:
BLAST of DY256862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PSDE_MOUSE4.775e-2840.7826S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_HUMAN4.775e-2840.7826S proteasome non-ATPase regulatory subunit 14 OS... [more]
YPT5_CAEEL8.145e-2837.90Uncharacterized protein F37A4.5 OS=Caenorhabditis ... [more]
PSDE_CAEEL8.145e-2840.0026S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_YEAST1.064e-2740.6926S proteasome regulatory subunit RPN11 OS=Sacchar... [more]
RPN11_CANGA1.389e-2740.6926S proteasome regulatory subunit RPN11 OS=Candida... [more]
RPN11_SCHPO5.280e-2742.2326S proteasome regulatory subunit rpn11 OS=Schizos... [more]
RPN11_ENCCU4.469e-2639.8126S proteasome regulatory subunit RPN11 OS=Encepha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2CE05ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256862 ID=DY256862; Name=DY256862; organism=Citrus clementina; type=EST; length=1249bp
GGGTGTTGTTGGTGTTCGTTTTGTTTGTTGTTCCAGACAGTGTAGGGTGT
AGGCAGAGATGGAGAGAAAACAACATAGTATCGATGGACTCGTCAATAGC
GCAAAAGACATGGGAACTGGAAAACAACATAGTATCGATGGAGACACCGC
CGACAAACTCAACAGCCGACACGTCAGCATCGGACGCGATTTTCTTCTAC
GACGAAGGGGCGCAGACCAAGTTCCAGCAAGAGAAGCCCTGGGTCAATGA
CCCTCACTACTTCAAGCGCGTGAAGATCTCCGCACTCGCCCTCCTCAAGA
TGGTCGTCCATGCGCGATCCGGTGGGACCATCGAGGTCATGGGCCTTATG
CAAGGCAAAACCGACGGCGACGCCATCATTGTCATGGACGCCTTTGCTTT
GCCCGTTGAAGGTACCGAAACCAGGGTTAATGCTCAGGCCGATGCTTATG
AATATATGGTCGATTATTCCCAAACCAACAAACAGGCCGGACGTCTGGAG
AATGCTGTTGGGTGGTACCATTCACATCCTGGCTATGGATGCTGGCTTTC
GGGTATTGATGTTTCAACTCAAATGCTTAATCAGCAGTTTCAGGAGCCAT
TTTTGGCTGTTGTGATTGATCCTACTAGGACTGTTTCTGCTGGGAAAGTT
GAGATTGGAGCTTTCAGGACGTATCCTGAAGGATACAAGCCTCCGGATGA
ACCCATCTCTGAGTATCAGACCATTCCTTTGAATAAGATTGAAGACTTTG
GTGTGCATTGTAAACAGTATTATTCATTGGATATTACTTATTTTAAGTCC
TCTCTTTGATGCCATCTTTTGGATCTGCTGGGGAACAAGTACTGGGTGAA
TACTCTTTTCTCTTCCCCTTGCTTGGTAATGGGGACTATGTTCCAGGACA
ATTTCGGATTTTACCTAAAAACTGGAACAAGCTGAAAATCAATTGGCCTC
ATTCCCCCTTTGGGCCCCTAAAAACACCCCCTCCAAAAAGGAAGGAGAAG
AATTCCAAGTCTGCTAAAAATCCCCTCGGGACAGTGCAAAAAAAAACGTT
TAAACAGGGTTCGGGGGTCTAAGGTCCAAGGGTTTTATAAAAAAAATTCT
TTTTTTATTTTTTTTTTTAAAAAAATCCCCCCAAAAAACCCCCCCCCGGG
GGGCCCCCTTTCAAACCCCCCTAAACCCTTTTTGTTATATAGAAATCCCC
TGTTAATTTTTTTTTCCCACATCTTATTATTAGGGGGGGGGGGGACCCC
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