DY256873

Overview
NameDY256873
Unique NameDY256873
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length425
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS27_BOVIN (40S ribosomal protein S27 OS=Bos taurus GN=RPS27 PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.211e-24
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   20 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKK 250
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+A+LTEGCSF++K
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS27L_RAT (40S ribosomal protein S27-like protein OS=Rattus norvegicus GN=Rps27l PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.211e-24
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   20 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKK 250
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+A+LTEGCSF++K
Sbjct:    6 DLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS27L_MOUSE (40S ribosomal protein S27-like protein OS=Mus musculus GN=Rps27l PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.211e-24
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   20 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKK 250
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+A+LTEGCSF++K
Sbjct:    6 DLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS27L_HUMAN (40S ribosomal protein S27-like protein OS=Homo sapiens GN=RPS27L PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.211e-24
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   20 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKK 250
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+A+LTEGCSF++K
Sbjct:    6 DLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS27L_BOVIN (40S ribosomal protein S27-like protein OS=Bos taurus GN=RPS27L PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.211e-24
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   20 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKK 250
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+A+LTEGCSF++K
Sbjct:    6 DLLHPSLDEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS27_NEUCR (40S ribosomal protein S27 OS=Neurospora crassa GN=rps-27 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.601e-24
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   17 IDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKK 250
            +DLLNP             LV +P SFFMDVKC GCF ITTVFSH+QTVV+C  C +VLCQPTGG+A+LTEGCSF++K
Sbjct:    5 VDLLNPSPASEARKHKLKTLVPAPRSFFMDVKCPGCFTITTVFSHAQTVVICQGCTTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS27_HOMAM (40S ribosomal protein S27 OS=Homarus americanus GN=RPS27 PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.601e-24
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 2
Query:   20 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKK 250
            DLL+P            RLVQ PNS+FMDVKC GCF I+TVFSH+QTVV C  C +VLCQPTGG+AKLT+GCSF+KK
Sbjct:    6 DLLHPSPSEEKRKCKLKRLVQHPNSYFMDVKCPGCFKISTVFSHAQTVVACVGCATVLCQPTGGKAKLTDGCSFRKK 82          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS27_PONAB (40S ribosomal protein S27 OS=Pongo abelii GN=RPS27 PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 7.848e-24
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 2
Query:   20 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKK 250
            D L+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+A+LTEGCSF++K
Sbjct:    6 DPLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS27_CAEEL (40S ribosomal protein S27 OS=Caenorhabditis elegans GN=rps-27 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 7.848e-24
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   17 IDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKK 250
            +DLL+P            RLVQ PNS+FMDVKC GCF I+TVFSH+ TVVVC  C +VLCQPT G+AKLTEGCSF+KK
Sbjct:    5 VDLLHPEPQREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCNTVLCQPTRGKAKLTEGCSFRKK 82          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS27B_YEAST (40S ribosomal protein S27-B OS=Saccharomyces cerevisiae GN=RPS27B PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.761e-21
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 2
Query:   20 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKK 250
            DLL+P A           LVQ P S+F+DVKC GC NITTVFSH+QT V C +C +VLC PTGG+AKL+EG SF++K
Sbjct:    6 DLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTPTGGKAKLSEGTSFRRK 82          
The following BLAST results are available for this feature:
BLAST of DY256873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS27_BOVIN1.211e-2464.9440S ribosomal protein S27 OS=Bos taurus GN=RPS27 P... [more]
RS27L_RAT1.211e-2464.9440S ribosomal protein S27-like protein OS=Rattus n... [more]
RS27L_MOUSE1.211e-2464.9440S ribosomal protein S27-like protein OS=Mus musc... [more]
RS27L_HUMAN1.211e-2464.9440S ribosomal protein S27-like protein OS=Homo sap... [more]
RS27L_BOVIN1.211e-2464.9440S ribosomal protein S27-like protein OS=Bos taur... [more]
RS27_NEUCR4.601e-2462.8240S ribosomal protein S27 OS=Neurospora crassa GN=... [more]
RS27_HOMAM4.601e-2464.9440S ribosomal protein S27 OS=Homarus americanus GN... [more]
RS27_PONAB7.848e-2463.6440S ribosomal protein S27 OS=Pongo abelii GN=RPS27... [more]
RS27_CAEEL7.848e-2464.1040S ribosomal protein S27 OS=Caenorhabditis elegan... [more]
RS27B_YEAST4.761e-2158.4440S ribosomal protein S27-B OS=Saccharomyces cerev... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA2CG03ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256873 ID=DY256873; Name=DY256873; organism=Citrus clementina; type=EST; length=425bp
GGTTCTCCAAAATGATATTGATTTGTTGAATCCTCCTGCTGAGCTTGAGA
AGAAGAAGCACAAGCTTAAGCGGCTTGTTCAATCCCCCAATTCCTTTTTC
ATGGATGTGAAATGTCAGGGTTGTTTCAACATAACAACTGTTTTCAGCCA
CTCTCAAACTGTTGTGGTTTGTGGCAACTGCCAATCCGTTCTGTGCCAGC
CCACTGGTGGTCGTGCCAAACTCACTGAGGGATGCTCGTTCAAAAAAAAA
GGTGACTAAGTGTTGCCTAAATGATAAATCTTTTCATTTTGGTTATGATG
TATTGAGTTTGGTAGAAGGTTTAAGGTCAGACAGTGTTTTAACCTTTTGT
TTCAAATTTAATTTACTCGATGTAGTGGATGATCTTATGTTTGAAAGAAA
ATATTTTTAAGTGAATGTTTTTCAA
back to top