DY256881

Overview
NameDY256881
Unique NameDY256881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256881 vs. ExPASy Swiss-Prot
Match: RS11_RAT (40S ribosomal protein S11 OS=Rattus norvegicus GN=Rps11 PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 7.220e-44
Identity = 84/124 (67.74%), Postives = 101/124 (81.45%), Query Frame = 1
Query:   16 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 384
            R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:   35 RYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of DY256881 vs. ExPASy Swiss-Prot
Match: RS11_MOUSE (40S ribosomal protein S11 OS=Mus musculus GN=Rps11 PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 7.220e-44
Identity = 84/124 (67.74%), Postives = 101/124 (81.45%), Query Frame = 1
Query:   16 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 384
            R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:   35 RYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of DY256881 vs. ExPASy Swiss-Prot
Match: RS11_MACFA (40S ribosomal protein S11 OS=Macaca fascicularis GN=RPS11 PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 7.220e-44
Identity = 84/124 (67.74%), Postives = 101/124 (81.45%), Query Frame = 1
Query:   16 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 384
            R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:   35 RYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of DY256881 vs. ExPASy Swiss-Prot
Match: RS11_HUMAN (40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 7.220e-44
Identity = 84/124 (67.74%), Postives = 101/124 (81.45%), Query Frame = 1
Query:   16 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 384
            R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:   35 RYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of DY256881 vs. ExPASy Swiss-Prot
Match: RS11_BOVIN (40S ribosomal protein S11 OS=Bos taurus GN=RPS11 PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 7.220e-44
Identity = 84/124 (67.74%), Postives = 101/124 (81.45%), Query Frame = 1
Query:   16 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 384
            R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:   35 RYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of DY256881 vs. ExPASy Swiss-Prot
Match: RS11_YEAST (40S ribosomal protein S11 OS=Saccharomyces cerevisiae GN=RPS11A PE=1 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 9.429e-44
Identity = 82/127 (64.57%), Postives = 102/127 (80.31%), Query Frame = 1
Query:    4 KGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 384
            K   R++K+ GLGFKTP+ AIEG+YIDKKCPFTG VSIRG+IL GT  S KM+RTI++RR YLH++ KY RYEKRH N+P H+SP FRV+ GD V +GQCRP+SKTVRFNV+KV  + ++G A K F
Sbjct:   29 KRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKV--SAAAGKANKQF 153          
BLAST of DY256881 vs. ExPASy Swiss-Prot
Match: RS11_ANOGA (40S ribosomal protein S11 OS=Anopheles gambiae GN=RpS11 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 6.112e-43
Identity = 84/129 (65.12%), Postives = 100/129 (77.52%), Query Frame = 1
Query:    4 KGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFT 387
            K G R   SIGLGFKTP+EAI GTYIDKKCPFTG +SIRGRIL G     KM+RTI++RR+YLHF++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV       G+KK F+
Sbjct:   26 KKGLRMHHSIGLGFKTPKEAITGTYIDKKCPFTGHISIRGRILTGVVRKMKMHRTIVIRRDYLHFIRKYDRFEKRHRNMSVHLSPCFRDVEAGDIVTVGECRPLSKTVRFNVLKV---SKMAGSKKKFS 151          
BLAST of DY256881 vs. ExPASy Swiss-Prot
Match: RS11_DROYA (40S ribosomal protein S11 OS=Drosophila yakuba GN=RpS11 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.380e-41
Identity = 82/121 (67.77%), Postives = 95/121 (78.51%), Query Frame = 1
Query:   25 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 384
            + +GLGFKTPREAI+GTYIDKKCP+TG V IRGRIL G    AKM RTI++RR+YLHFV+KY R+EKRH N+  H SP FR V+ GD V IG+CRPLSKTVRFNVLKV       GAKK+F
Sbjct:   35 RDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKV---SKGQGAKKSF 152          
BLAST of DY256881 vs. ExPASy Swiss-Prot
Match: RS11_DROPS (40S ribosomal protein S11 OS=Drosophila pseudoobscura pseudoobscura GN=RpS11 PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 4.380e-41
Identity = 82/124 (66.13%), Postives = 96/124 (77.42%), Query Frame = 1
Query:   16 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 384
            R ++ +GLGFKTPREAI+GTYIDKKCP+TG V IRGRIL G     KM RTI++RR+YLHFV+KY R+EKRH N+  H SP FR V+ GD V IG+CRPLSKTVRFNVLKV       GAKK+F
Sbjct:   32 RRYRDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILIGVVRKTKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPAFRDVEHGDIVTIGECRPLSKTVRFNVLKV---NKGQGAKKSF 152          
BLAST of DY256881 vs. ExPASy Swiss-Prot
Match: RS11_DROME (40S ribosomal protein S11 OS=Drosophila melanogaster GN=RpS11 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.380e-41
Identity = 82/121 (67.77%), Postives = 95/121 (78.51%), Query Frame = 1
Query:   25 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 384
            + +GLGFKTPREAI+GTYIDKKCP+TG V IRGRIL G    AKM RTI++RR+YLHFV+KY R+EKRH N+  H SP FR V+ GD V IG+CRPLSKTVRFNVLKV       GAKK+F
Sbjct:   35 RDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKV---SKGQGAKKSF 152          
The following BLAST results are available for this feature:
BLAST of DY256881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS11_RAT7.220e-4467.7440S ribosomal protein S11 OS=Rattus norvegicus GN=... [more]
RS11_MOUSE7.220e-4467.7440S ribosomal protein S11 OS=Mus musculus GN=Rps11... [more]
RS11_MACFA7.220e-4467.7440S ribosomal protein S11 OS=Macaca fascicularis G... [more]
RS11_HUMAN7.220e-4467.7440S ribosomal protein S11 OS=Homo sapiens GN=RPS11... [more]
RS11_BOVIN7.220e-4467.7440S ribosomal protein S11 OS=Bos taurus GN=RPS11 P... [more]
RS11_YEAST9.429e-4464.5740S ribosomal protein S11 OS=Saccharomyces cerevis... [more]
RS11_ANOGA6.112e-4365.1240S ribosomal protein S11 OS=Anopheles gambiae GN=... [more]
RS11_DROYA4.380e-4167.7740S ribosomal protein S11 OS=Drosophila yakuba GN=... [more]
RS11_DROPS4.380e-4166.1340S ribosomal protein S11 OS=Drosophila pseudoobsc... [more]
RS11_DROME4.380e-4167.7740S ribosomal protein S11 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DA02ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256881 ID=DY256881; Name=DY256881; organism=Citrus clementina; type=EST; length=527bp
GGAAAGGGAGGGAATCGATTCTGGAAGAGCATAGGCTTGGGATTCAAGAC
TCCCAGAGAGGCAATTGAAGGGACTTACATTGATAAGAAGTGTCCGTTCA
CCGGCACTGTTTCCATCAGGGGTCGTATCCTTGCTGGTACTTGCCACAGT
GCTAAGATGAACAGAACCATCATCGTTAGGCGTAACTACCTTCACTTTGT
GAAGAAATATCAGAGGTATGAGAAGAGGCACTCTAACATTCCAGCACACA
TCTCACCTTGTTTCCGTGTGAAAGAGGGAGACCATGTTATCATTGGCCAG
TGCAGGCCTTTGTCAAAGACGGTCAGGTTTAATGTCTTGAAAGTGATACC
TGCTGGGTCTTCTGGTGGTGCAAAGAAGGCATTCACGGCGATGTGAGTTG
GAGTCGGCTGTTTCCAACATTAAATTTTTGCTACTTTTGTTCCATGGGAC
TTTGTTATTTGGATTTTTGCATTGGGAATTAAATCCTGTTATGTCCTAAT
ATATATTTTCTAGAGAAGTTAATTTTT
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