DY256888

Overview
NameDY256888
Unique NameDY256888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256888 vs. ExPASy Swiss-Prot
Match: DNJA1_BOVIN (DnaJ homolog subfamily A member 1 OS=Bos taurus GN=DNAJA1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.342e-13
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    7 GNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALKGYTVRLTTLDGRILNI---PIDNVIHPNYEMTVPREGMPIQNEPSKRGKLTIKFNIKFP 306
            G+ +  ++P D++ ++D+K H+VFTR G DL +   I L EAL G+   ++TLD R + I   P   V H + +  V  EGMPI   P ++G+L I+F + FP
Sbjct:  228 GDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIK-CVLNEGMPIYRRPYEKGRLIIEFKVNFP 329          
BLAST of DY256888 vs. ExPASy Swiss-Prot
Match: DNJA4_HUMAN (DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.976e-13
Identity = 43/102 (42.16%), Postives = 59/102 (57.84%), Query Frame = 1
Query:    7 GNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALKGYTVRLTTLDGRILNI--PIDNVIHPNYEMTVPREGMPIQNEPSKRGKLTIKFNIKFP 306
            G+ +  ++P DV+ ++D+K HSVF R G+DLI+   I L EAL G+   + TLD RIL I      VI       V  EGMPI   P ++G L I+F + FP
Sbjct:  229 GDQEPELEPGDVIIVLDQKDHSVFQRRGHDLIMKMKIQLSEALCGFKKTIKTLDNRILVITSKAGEVIKHGDLRCVRDEGMPIYKAPLEKGILIIQFLVIFP 330          
BLAST of DY256888 vs. ExPASy Swiss-Prot
Match: DNJA4_MOUSE (DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    7 GNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALKGYTVRLTTLDGRILNIPIDN--VIHPNYEMTVPREGMPIQNEPSKRGKLTIKFNIKFP 306
            G+ +  + P DV+ ++D+K HSVF R G DLI+   I L EAL G+   + TLD R+L I   +  VI       +  EGMPI   P ++G + I+F + FP
Sbjct:  229 GDQEPELDPGDVIIVLDQKDHSVFQRRGQDLIMKMKIQLSEALCGFKKTIKTLDDRVLVISSKSGEVIKHGDLKCIRNEGMPIYKAPLEKGVMIIQFLVVFP 330          
BLAST of DY256888 vs. ExPASy Swiss-Prot
Match: DNJ20_CAEEL (DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=dnj-20 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   31 PADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALKGYTVRLTTLDGRILNIPIDNVIHPNYEMTVPREGMPIQNEPSKRGKLTIKFNIKFP-TSLTAEQKAGI 339
            P D+ F +  + H  F R G+DL    TI+L +AL G+ + +  LDG I+ +  D V  P   +    EGMP   + +K+G L + F+++FP T L+ EQKA I
Sbjct:  235 PGDLKFKIRIQKHPRFERKGDDLYTNVTISLQDALNGFEMEIQHLDGHIVKVQRDKVTWPGARLRKKDEGMPSLEDNNKKGMLVVTFDVEFPKTELSDEQKAQI 338          
BLAST of DY256888 vs. ExPASy Swiss-Prot
Match: XDJ1_SCHPO (DnaJ protein homolog xdj1 OS=Schizosaccharomyces pombe GN=xdj1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.462e-12
Identity = 41/97 (42.27%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   25 VKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALKGYT-VRLTTLDGRILNI--PIDNVIHPNYEMTVPREGMPIQNEPSKRGKLTIKFNIKFP 306
            + P DV+  + +KPH VF R G+DL     I+L EAL G+  V LTTLDGR L    PI  ++HP   + +P EGM   ++   RG L ++ +I+FP
Sbjct:  248 ITPGDVILQLHQKPHPVFERLGDDLKAKLKISLAEALTGFNRVILTTLDGRGLEYVQPIGKILHPGDCLIIPGEGMYKDSKTDLRGDLYLEVDIEFP 344          
The following BLAST results are available for this feature:
BLAST of DY256888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
DNJA1_BOVIN5.342e-1338.83DnaJ homolog subfamily A member 1 OS=Bos taurus GN... [more]
DNJA4_HUMAN6.976e-1342.16DnaJ homolog subfamily A member 4 OS=Homo sapiens ... [more]
DNJA4_MOUSE2.030e-1239.22DnaJ homolog subfamily A member 4 OS=Mus musculus ... [more]
DNJ20_CAEEL2.030e-1237.50DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=d... [more]
XDJ1_SCHPO3.462e-1242.27DnaJ protein homolog xdj1 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DB10ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256888 ID=DY256888; Name=DY256888; organism=Citrus clementina; type=EST; length=609bp
GCGGGGGGAAATGTGCAGCAAAATGTTAAACCTGCAGACGTCGTCTTCAT
CGTCGACGAGAAGCCTCACAGTGTGTTTACTCGAGATGGGAATGATTTGA
TCGTCACAAGGACGATAACTCTCGGTGAGGCCTTGAAAGGTTATACGGTT
CGTCTCACCACCCTGGATGGAAGGATTTTGAACATCCCAATCGACAATGT
GATTCATCCCAACTATGAGATGACTGTCCCGAGAGAGGGGATGCCAATTC
AGAACGAGCCATCAAAGAGAGGCAAGTTGACAATCAAGTTCAACATCAAG
TTCCCAACAAGTTTGACTGCAGAGCAGAAGGCCGGGATCAACTTTTAAGT
TTTAACAGCTTTTAAATCGATGGTTACCTTGGTTTGGGTTGTTTCAGAGC
GGCGGTGTCCTAATTAATGTTTTTTTGGAGCTGGCTAAAGTTACAGCATC
TGTAAGTTACAGATGCTGCTTCAGCCCAGCAACCAACCTTGCTTTGCGTT
GCTTTTTCTCTGTAAGTCAGGACACGTGTGCTATTTGCTTTGGGCTTTTT
TTTTTTTCTTCAAAATGTGCGTCAGTTGTGTATAAATAAAGATTTTGACT
TTTGTCCTT
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