DY256904

Overview
NameDY256904
Unique NameDY256904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1036
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9743 contig Ccv1_Contig9743:10..1045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY256904 vs. ExPASy Swiss-Prot
Match: CHMP6_MOUSE (Charged multivesicular body protein 6 OS=Mus musculus GN=Chmp6 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 9.150e-19
Identity = 55/178 (30.90%), Postives = 94/178 (52.81%), Query Frame = 1 
Query:  163 MGNLFVKKP--KITDVDRAILSLKTQRRKLAQYQQQLDAVIEAEK*AARDLIXXXXXXXXXXXXXXXXXXXXXXXXVDGWLINVEQQLADIELASKQKAVFESLKSGTNAIKAIQSEINLEDVQKLMDDTEEAKAYQDEINAILGEKLSAEDEEEILAEFDNLEAQLAVQEMPEVPTE 690
            MGNLF +K   ++T+ DRAIL LK QR KL QYQ+++   +E E+  AR L+                         +  + ++E  +  IE    +  V E L+ G   +  +   +++E+V++++D+T+EA  YQ +I+ +L    + EDE+ IL E + +  +    E+PEVP+E
Sbjct:    1 MGNLFGRKKQSRVTEQDRAILQLKQQRDKLRQYQKRVTQQLERERALARQLLRDGRKERAKLLLKKKRYREQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQVGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGNFTQEDEDAILEELNAITQE--QMELPEVPSE 176
The following BLAST results are available for this feature:
BLAST of DY256904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CHMP6_MOUSE9.150e-1930.90Charged multivesicular body protein 6 OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DE02ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256904 ID=DY256904; Name=DY256904; organism=Citrus clementina; type=EST; length=1036bp
GGCTGAAACTTTAACAAACAGAAACTAGAAAAGAATGAGGGCGCTCTAGG
ACTGAAAAAACCCATCCCCCCATTCTTTTCTTAATTTAATTATCATATTT
TATCGACATATTTGAAATTTCAATCATAATATACCTAAGTTTTTTTTAAA
AAAAATTGAAAGATGGGAAATTTGTTTGTGAAGAAACCGAAGATCACAGA
TGTGGATCGAGCGATTCTGTCTCTAAAGACCCAGCGACGCAAGCTAGCTC
AGTATCAACAGCAGCTTGATGCTGTCATTGAAGCAGAAAAGTAAGCTGCT
AGAGACTTGATTCGTCAGAAGAGAAAGGATAGGGCGTTGTTAGCATTGAA
GAAGAAAAAAGCACAGGAAGAATTATTGAAACAGGTTGATGGCTGGCTCA
TTAATGTTGAGCAACAATTGGCAGATATTGAATTAGCGAGCAAGCAGAAA
GCTGTATTTGAGAGTTTGAAGTCAGGTACTAATGCCATTAAGGCAATACA
AAGTGAGATAAACCTGGAGGACGTTCAAAAGTTAATGGATGATACTGAAG
AAGCTAAGGCTTATCAGGATGAAATTAATGCAATATTGGGTGAGAAATTA
TCAGCAGAAGATGAAGAGGAGATTTTGGCAGAATTTGACAACTTGGAAGC
TCAGCTTGCAGTTCAAGAAATGCCAGAAGTGCCAACTGAAGGACCATCCG
AAGAACAAGAGAAGTTGGATCTTCCTAATGTTCCAACCAAAGTTCCTGTT
GCTTCCCGTGTGGTTGCAGATGATGCTGAAATTGCTCCAGCTGAAGCCTC
CACAAAGAGAAGAGTTATGGAGGAGCCGTTGCCGGCATAATTGACTGAAC
GTTTAAACATTATTCGAAATTGCGTAAACAGCCCTTGACGGACTATTTCC
CGGGTGGGGTTGGTCAGCTCATGTACTAATTCTTTTGGTTTGTTCTTGGG
TACTTTTCCGGCTTGAATTTTTAGGAATTACAAGGGTTCCCAAATAAAAA
TCCTGGGACAAAGGTGGAAATTTATTGGGGACTATT
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