DY256910

Overview
NameDY256910
Unique NameDY256910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1065
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY256910 vs. ExPASy Swiss-Prot
Match: CHMP5_XENLA (Charged multivesicular body protein 5 OS=Xenopus laevis GN=chmp5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.575e-11
Identity = 35/98 (35.71%), Postives = 54/98 (55.10%), Query Frame = 1 
Query:  328 SKAKNKRAAIQCLKRKRLYKQQIKHLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEIDEQTENMKQIQEALSTPIG 621
            SK   K+ A++ LK+KR+Y+QQ  +L      +      ++  K T  TVDA++ GA  MK   K   ID ++   D++++  EN  +IQEALS   G
Sbjct:   57 SKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTIQTLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYG 154
[Close]
BLAST of DY256910 vs. ExPASy Swiss-Prot
Match: CHM4B_CHICK (Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.575e-11
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 1 
Query:  337 KNKRAAIQCLKRKRLYKQQIKHLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEIDEQTENMKQIQEALSTPIG 621
            KNKRAA+Q LKRK+ Y++Q+  +      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I EQ E   +I  A+S P+G
Sbjct:   62 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADEISTAISKPVG 156
The following BLAST results are available for this feature:
BLAST of DY256910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CHMP5_XENLA9.575e-1135.71Charged multivesicular body protein 5 OS=Xenopus l... [more]
CHM4B_CHICK9.575e-1140.00Charged multivesicular body protein 4b OS=Gallus g... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DF02ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256910 ID=DY256910; Name=DY256910; organism=Citrus clementina; type=EST; length=1065bp
GGGCTTAAGATAATCGCAGATCGAACCACGCTCTCTCCCTCTCATATAAT
TCACAGATCTCTACCGATTGTATCTTTTAATAAAGTCAGAATCCCAATTC
TCGTTTTTTTTTTTCCCTCATTTTTATAATTACGGAGGTAAAATCGAGGG
TTTTTGATTAATCGCGGAAAATCAAACATGTTTACTCGGCTTTTTGGAAA
ACCTAAACAGGAAACCAATGCCTTAACCACGCTCGATAAGCTAAATGAAA
CTCTTGAAATGCTAAAGAAAAAGGAGGAAGTACTCCTGAAAAAGGCTTCT
GTAGAGGTTGAAAAGGCCAAGGACTACTCCAAAGCAAAGAACAAAAGAGC
GGCCATACAATGTTTGAAGAGGAAGAGGCTATACAAACAGCAAATAAAGC
ACCTTGGGAATTTCCAATTGCGCATTCATGATCAAATGATAATGCTAGAG
GGTGCTAAAGCCACAACTGAAACTGTAGATGCATTGAGGACGGGAGCATC
AACAATGAAGGCTATGCAGAAAGCAACGAACATAGATGATGTGGATAAGA
CCATGGATGAGATCGATGAGCAGACCGAGAACATGAAGCAGATTCAAGAA
GCATTATCAACTCCTATTGGTGCTGCTGCTGATTTCGATGAGGATGAATT
GGAAGCAGAACTTGAAGAACTGGAAGGTGCTGAGTTGGAAGAGCAGCTTC
TACAGCCAGCTACAACAGCTCCTGCTGCTCCGGTTCAAGTCCCTGCTGGC
AAGAAACAAGCCCGTCCTGTTCCCAAAAGCAGCGAACAGCTGAGGAAGAT
GAGCTTGCTGCTTTACAAGCTGAAATGGCTCTTAAAGCAGGGTTTTACGG
CCATAATGAAGAATATTATTAAAATAACCTGGCCGAATAATGTGAAAATT
TATGCCCTATTTGGATTACCTTCAAAAATTCTGGTGTGCATTCAAGGAAC
AAACTGGTATTAAAAGTTTGGCGTAAACTAATCCTGGTTTGAAAAAAGGA
ACCCTGGATTCCGGCTCTAAAAAAACCTTTTAAATGGAATTCATCCATTT
TTAAAGGGTTTTTTC
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