DY256911

Overview
NameDY256911
Unique NameDY256911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1120
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_BURMA (Regulator of ribonuclease activity A OS=Burkholderia mallei GN=rraA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.036e-34
Identity = 68/117 (58.12%), Postives = 87/117 (74.36%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 351
            TLK+F+ N L+R  LE+ G  RVLVVDGGGSLRCA++GGN    A  NGWAGIVVNGC+RD DE+  C +GV ALA+ P K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:   43 TLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_BURM9 (Regulator of ribonuclease activity A OS=Burkholderia mallei (strain NCTC 10229) GN=rraA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.036e-34
Identity = 68/117 (58.12%), Postives = 87/117 (74.36%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 351
            TLK+F+ N L+R  LE+ G  RVLVVDGGGSLRCA++GGN    A  NGWAGIVVNGC+RD DE+  C +GV ALA+ P K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:   43 TLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_BURM7 (Regulator of ribonuclease activity A OS=Burkholderia mallei (strain NCTC 10247) GN=rraA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.036e-34
Identity = 68/117 (58.12%), Postives = 87/117 (74.36%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 351
            TLK+F+ N L+R  LE+ G  RVLVVDGGGSLRCA++GGN    A  NGWAGIVVNGC+RD DE+  C +GV ALA+ P K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:   43 TLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_BURTA (Regulator of ribonuclease activity A OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rraA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 6.577e-34
Identity = 70/121 (57.85%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 363
            TLK+F+ N L+R  LE+ G  RVLVVDGGGSLRCA++GGN    A  NGW GIVVNGC+RD  E+  C  GV ALA+ P K++K+G G   VP+ + GTRI+ G+W+YAD DGIL+S A L
Sbjct:   43 TLKLFEDNTLVRAALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWVGIVVNGCVRDSAELAECRAGVLALAAHPRKSDKRGAGVSDVPVDVRGTRIAPGDWIYADADGILVSDAAL 163          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_BURP8 (Regulator of ribonuclease activity A OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rraA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 8.590e-34
Identity = 68/121 (56.20%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 363
            TLKVF+ N L+R  LEEKG  RVLVVDGGGSLRCA++GGN       NGWAGIVV GC+RD  E+N C++G+ ALA+ P ++ K+G GE+ V + + G+ +  GEW+YAD+DG+L+S A L
Sbjct:   43 TLKVFEDNTLVRATLEEKGVARVLVVDGGGSLRCALVGGNLGKLGEKNGWAGIVVFGCVRDTLELNECNLGIIALATHPQRSQKRGGGERDVSLRLPGSVVRPGEWIYADSDGVLVSSAPL 163          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_DECAR (Regulator of ribonuclease activity A OS=Dechloromonas aromatica (strain RCB) GN=rraA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.914e-33
Identity = 67/122 (54.92%), Postives = 88/122 (72.13%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELS 366
            TLK+F+ N L+RE   E G  +VLV+DGGGSLRCA++G    + A+ NGW G+VV GCIRD  +ING DIGVRAL + P K  KKG+G+K+V +T GG   + GE+LYAD DG+L+S   L+
Sbjct:   42 TLKIFEDNSLVREVFGEDGKGKVLVIDGGGSLRCALVGDQLAILANKNGWEGVVVYGCIRDSGDINGIDIGVRALNTHPQKTLKKGVGDKNVAVTFGGVTFNPGEYLYADEDGVLVSGKALT 163          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_CUPTR (Regulator of ribonuclease activity A OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rraA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.264e-33
Identity = 66/121 (54.55%), Postives = 86/121 (71.07%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 363
            TLKVF+ N L+R  LE  G  RVLV+DGGGSLRCA++GGN  + A  NGW GIVVNGCIRD  E++ CDIG+RALA+ P K+ K+ +GE  V + + G  +  G W+Y D DGIL++  +L
Sbjct:   43 TLKVFEDNSLVRATLESPGRGRVLVIDGGGSLRCALVGGNLGLLAEKNGWVGIVVNGCIRDTAELDVCDIGIRALAAHPQKSQKRNVGESEVTVQMPGAVVRPGNWIYVDVDGILVADDKL 163          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_RALEH (Regulator of ribonuclease activity A OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rraA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 7.272e-33
Identity = 66/121 (54.55%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 363
            TLKVF+ N L+R  LE  G  RVLV+DGGGSLRCA++GGN  + A  NGW GIVVNGCIRD  E++ CDIG+RALA  P K+ K+ +GE  V + + G  +  G W+Y D DG+L+S   L
Sbjct:   43 TLKVFEDNSLVRTALEAPGQGRVLVIDGGGSLRCALVGGNLGLLAEKNGWVGIVVNGCIRDTAELDVCDIGIRALAVHPQKSQKRNVGESDVAVQMPGAVVRPGNWIYVDADGVLVSDERL 163          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_RALSO (Regulator of ribonuclease activity A OS=Ralstonia solanacearum GN=rraA PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 9.497e-33
Identity = 65/121 (53.72%), Postives = 86/121 (71.07%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 363
            TLKVF+ N L+R  LE+ G  RVLVVDGGGSLRCA++GGN    A +NGW G++VNGC+RD  E+  C++GV ALA+ P K+ KK  GE+ + + + G  I  GEW+Y D DG+L+SR  L
Sbjct:   43 TLKVFEDNGLVRAMLEQPGEGRVLVVDGGGSLRCALVGGNLAKLAEDNGWEGVLVNGCVRDTRELAACNVGVHALAAHPRKSFKKNQGERDIGVQMPGAYIHPGEWIYGDEDGVLVSRERL 163          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_BURPP (Regulator of ribonuclease activity A OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rraA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.240e-32
Identity = 65/122 (53.28%), Postives = 87/122 (71.31%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELS 366
            TLKVF+ N L+R  LEEKG  RVLV+DGGGSLRCA++GGN    A  NGWAGIV+NGC+RD  E+N  ++G+ AL + P +  K G GE+ V + + G  +  GEW+YAD DG+L++ A L+
Sbjct:   43 TLKVFEDNALVRATLEEKGAGRVLVIDGGGSLRCALVGGNLAQLAEQNGWAGIVLNGCVRDALELNEVNVGIAALTTSPRRGQKLGTGERDVAVHLPGALVRPGEWVYADIDGVLVASAALN 164          
The following BLAST results are available for this feature:
BLAST of DY256911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
RRAA_BURMA5.036e-3458.12Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURM95.036e-3458.12Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURM75.036e-3458.12Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURTA6.577e-3457.85Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURP88.590e-3456.20Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_DECAR1.914e-3354.92Regulator of ribonuclease activity A OS=Dechloromo... [more]
RRAA_CUPTR3.264e-3354.55Regulator of ribonuclease activity A OS=Cupriavidu... [more]
RRAA_RALEH7.272e-3354.55Regulator of ribonuclease activity A OS=Ralstonia ... [more]
RRAA_RALSO9.497e-3353.72Regulator of ribonuclease activity A OS=Ralstonia ... [more]
RRAA_BURPP1.240e-3253.28Regulator of ribonuclease activity A OS=Burkholder... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DF03ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256911 ID=DY256911; Name=DY256911; organism=Citrus clementina; type=EST; length=1120bp
ACCCTCAAGGTATTTCAATTTAATGTTTTGATTCGTGAGTTTCTTGAGGA
GAAGGGTAATTTAAGAGTTCTTGTTGTAGATGGGGGTGGGAGTTTGCGGT
GCGCTATATTGGGGGGTAACCCTGTCGTACAAGCCCACAATAACGGATGG
GCTGGAATAGTTGTGAATGGGTGTATTAGGGATGTTGATGAAATTAATGG
GTGTGATATTGGTGTGAGAGCACTGGCTTCTCGTCCCATGAAAGCCAATA
AGAAGGGGATTGGGGAGAAACATGTGCCAATAACTATTGGTGGGACAAGA
ATCAGTGATGGCGAATGGCTTTATGCTGACACAGATGGCATCTTGATTTC
TCGGGCAGAGTTATCTGTATGAGTCCTTTCCTTTGCAAATACCAAAACTG
CAGGTGCTTTTCCTGGAATGTATTCCCCTACTATTATGCCTAACTTGTTT
TCCCGAGCCCATTTATTAATTTTAGATGAACTTGTGTGGTGTGTCAAAAA
TCTATCCGACTTCGTTTTGATCTGTTTGTTTATTGCACATCAAATTGGAA
TGTTGTTTCTGGTGATGATGATAATAATGATTCCGATAAGAATAAATTAT
TATTGCTCTTTTGGCCTTTTGAGGGTAGACTCATGAAGTCCTTTGAAAAA
GTAAACCAGTTAAAAAAAAAACAAAAAAGCCAAAACAATTTCCAATCTCC
TACCCAATCTCCACAAAAATTAAACCCTTGGGGCCCCCCCCCGCCCAATT
TAAACTCAAAACCCAGAAAATTTATCCCTTCGGGCCCCATTTCCAACTCC
CTTTACCAATTTCCCCTATATGGGTTTCTATTAAAATTCAGGGCCCCCCT
TTTTAACACCTCGGGTTGGGAAAACCCCGGGCTTTCCCCCATTAACCCCC
TTTGCCCCCCCTCCCCCTTTCCCCCGCGGGGGTAAAAAAGAAAAAGCCCC
CCCCCCTTTCCCCCTTCCAAAAAATTTGCCCCCCCCGGGAATGGGAAAAG
GAAAAATGTGAACCCTTAAAAAATTTTTTAAAAAAATTCCCCCCTTAATT
TTTTTTTTAACACCCCCTTCCTTTTTTTTAACCCCAAAAGGCGCCAAAAA
TCGCGAAAAAAACCCCTTTA
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