DY256911

Overview
NameDY256911
Unique NameDY256911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1120
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9751 contig Ccv1_Contig9751:4..1123. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_BURXL (Regulator of ribonuclease activity A OS=Burkholderia xenovorans (strain LB400) GN=rraA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.116e-32
Identity = 66/121 (54.55%), Postives = 87/121 (71.90%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 363
            TLKVF+ N L+R  LEEKG  RVLVVDGGGS RCA++GGN    A  NGWAGIV+NGC+RD  E+N  ++G+ ALA+ P +  K G GE+ V + + G  +  GEW+YAD+DG+L++ A L
Sbjct:   43 TLKVFEDNALVRATLEEKGAGRVLVVDGGGSQRCALVGGNLAQIAQQNGWAGIVLNGCVRDTLELNEVNVGIAALATCPRRGQKLGTGERGVAVQLPGALVRPGEWIYADSDGVLVASAAL 163          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_ALHEH (Regulator of ribonuclease activity A OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rraA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.339e-31
Identity = 65/121 (53.72%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 363
            T+K+F+ N  +RE L E G  RVLVVDGGGS+RCA+LG N       NGWAG+VV GC+RD  E+   D+GV+AL   P+K+ KKGIGE+ V +T  G  I  G+WLYAD DGI+++R  L
Sbjct:   38 TVKLFEDNSAVREALSEPGEGRVLVVDGGGSMRCALLGDNLAALGQKNGWAGVVVYGCVRDSAELATIDLGVKALNVHPLKSVKKGIGERDVTVTFAGITIQAGDWLYADEDGIVVARNSL 158          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSEMY (Regulator of ribonuclease activity A OS=Pseudomonas mendocina (strain ymp) GN=rraA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.161e-30
Identity = 68/123 (55.28%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K  + N L++E ++  G  RVLVVDGGGSLR A+LG     +A  NGWAGIVV GCIRDVD I   D+GV+ALAS PMK +K+GIG+ +VP+T GG     GE+LYAD +GI++S   LS+
Sbjct:   38 TIKCHEDNSLVKEQVDLPGEGRVLVVDGGGSLRRALLGDMLAEKAAKNGWAGIVVYGCIRDVDVIAQADLGVQALASHPMKTDKRGIGDLNVPVTFGGVTFKPGEYLYADNNGIIVSPQALSM 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSEU2 (Regulator of ribonuclease activity A OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rraA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.980e-30
Identity = 66/123 (53.66%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            TLK F+ N  +RE +E  G  +VLVVDGGGSLRCA+LG     +A  NGW G+++ GCIRDVD I   D+GV+ALAS P K  K+GIGE +VP+T GG     GE+LYAD +G++IS + L++
Sbjct:   38 TLKCFEDNSRVREQVELDGKGKVLVVDGGGSLRCALLGDMLADKAAKNGWEGMLIYGCIRDVDVIAQTDLGVQALASHPKKTEKRGIGELNVPVTFGGVTFRPGEYLYADNNGVIISPSTLTM 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSEPF (Regulator of ribonuclease activity A OS=Pseudomonas fluorescens (strain Pf0-1) GN=rraA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.586e-30
Identity = 63/123 (51.22%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N L++E  E KGN +VLVVDGGGSLRCA+LG     +A  NGW G+V+ GCIRDVD I   D+GV+ALAS P K  K+G+G+ +VP+T  G     G+++YAD +G++IS + L +
Sbjct:   39 TIKCFEDNSLVKEQAELKGNGKVLVVDGGGSLRCALLGDMIAEKAAKNGWEGLVIYGCIRDVDVIAQTDLGVQALASHPKKTEKRGLGDLNVPVTFAGVTFHPGQYIYADNNGVIISPSPLKM 161          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_HALHL (Regulator of ribonuclease activity A OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rraA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 9.828e-30
Identity = 59/123 (47.97%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            TLK+F+ NV +RE L   G+  VLVVDGGGS+RCA+LG         NGW+G ++ GC+RD  E+   D GV+AL + P+K+ KKG+GE+ V +T  G  I  G+WLYAD DG++++  EL++
Sbjct:   42 TLKLFEDNVRVRELLSAPGDGGVLVVDGGGSMRCALLGDRLAELGRENGWSGAIIYGCVRDSAELAQIDFGVQALNTHPLKSQKKGLGERDVSVTFAGVTIQSGDWLYADEDGVVVASRELTL 164          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_AZOVD (Regulator of ribonuclease activity A OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rraA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.735e-29
Identity = 63/123 (51.22%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N L+++ ++  G  +VLVVDGGGSLR A+LG     +A  NGW G+VV GCIRDVD I   D+GV+ALA+ PMK +K+GIG+ +VP+T GG     GE+LYAD +GI++S   L +
Sbjct:   38 TIKCFEDNSLVKDQVDTDGKGKVLVVDGGGSLRRALLGDMLAEKAARNGWEGLVVYGCIRDVDVIAQTDLGVQALATHPMKTDKRGIGDLNVPVTFGGVTFRPGEYLYADNNGIIVSPQPLKM 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSESM (Regulator of ribonuclease activity A OS=Pseudomonas syringae pv. tomato GN=rraA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.371e-29
Identity = 60/123 (48.78%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            TLK F+ N L++E +E  G  +VLVVDGGGSLRCA+LG     +A  +GW G+V+ GC+RDVD +   D+GV+ALAS P ++ K+G+G+  +P+T GG     GE+LYAD +G++IS + L++
Sbjct:   38 TLKCFEDNSLVKEQVELDGKGKVLVVDGGGSLRCALLGDMLAEKAAKHGWEGLVIYGCVRDVDMLAQTDLGVQALASYPKRSEKRGVGQLDLPVTFGGVTFRPGEYLYADNNGVIISPSPLTM 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSEF5 (Regulator of ribonuclease activity A OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rraA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.087e-28
Identity = 62/123 (50.41%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N L++E +E KG  +VLVVDGGGSLR A+LG     +A  NGW G+V+ GCIRDVD I   D+GV+ALAS PMK +K+GIG+ +V +T  G     GE++YAD +G+++S + L +
Sbjct:   39 TIKCFEDNSLVKEQVELKGQGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGLVIYGCIRDVDVIAQTDLGVQALASHPMKTDKRGIGDLNVAVTFAGVTFRPGEYVYADNNGVIVSPSPLKM 161          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSEAE (Regulator of ribonuclease activity A OS=Pseudomonas aeruginosa GN=rraA PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.419e-28
Identity = 63/123 (51.22%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N L++E +++ G  +VLVVDGGGSLR A+LG     +A  NGW GIVV GCIRDVD I   D+GV+ALAS P+K +K+GIG+ +V +T GG     GE++YAD +GI++S   L +
Sbjct:   38 TIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGGVTFRPGEFVYADNNGIIVSPQALKM 160          
The following BLAST results are available for this feature:
BLAST of DY256911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
RRAA_BURXL2.116e-3254.55Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_ALHEH2.339e-3153.72Regulator of ribonuclease activity A OS=Alkalilimn... [more]
RRAA_PSEMY1.161e-3055.28Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSEU21.980e-3053.66Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSEPF2.586e-3051.22Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_HALHL9.828e-3047.97Regulator of ribonuclease activity A OS=Halorhodos... [more]
RRAA_AZOVD3.735e-2951.22Regulator of ribonuclease activity A OS=Azotobacte... [more]
RRAA_PSESM6.371e-2948.78Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSEF51.087e-2850.41Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSEAE1.419e-2851.22Regulator of ribonuclease activity A OS=Pseudomona... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DF03ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256911 ID=DY256911; Name=DY256911; organism=Citrus clementina; type=EST; length=1120bp
ACCCTCAAGGTATTTCAATTTAATGTTTTGATTCGTGAGTTTCTTGAGGA
GAAGGGTAATTTAAGAGTTCTTGTTGTAGATGGGGGTGGGAGTTTGCGGT
GCGCTATATTGGGGGGTAACCCTGTCGTACAAGCCCACAATAACGGATGG
GCTGGAATAGTTGTGAATGGGTGTATTAGGGATGTTGATGAAATTAATGG
GTGTGATATTGGTGTGAGAGCACTGGCTTCTCGTCCCATGAAAGCCAATA
AGAAGGGGATTGGGGAGAAACATGTGCCAATAACTATTGGTGGGACAAGA
ATCAGTGATGGCGAATGGCTTTATGCTGACACAGATGGCATCTTGATTTC
TCGGGCAGAGTTATCTGTATGAGTCCTTTCCTTTGCAAATACCAAAACTG
CAGGTGCTTTTCCTGGAATGTATTCCCCTACTATTATGCCTAACTTGTTT
TCCCGAGCCCATTTATTAATTTTAGATGAACTTGTGTGGTGTGTCAAAAA
TCTATCCGACTTCGTTTTGATCTGTTTGTTTATTGCACATCAAATTGGAA
TGTTGTTTCTGGTGATGATGATAATAATGATTCCGATAAGAATAAATTAT
TATTGCTCTTTTGGCCTTTTGAGGGTAGACTCATGAAGTCCTTTGAAAAA
GTAAACCAGTTAAAAAAAAAACAAAAAAGCCAAAACAATTTCCAATCTCC
TACCCAATCTCCACAAAAATTAAACCCTTGGGGCCCCCCCCCGCCCAATT
TAAACTCAAAACCCAGAAAATTTATCCCTTCGGGCCCCATTTCCAACTCC
CTTTACCAATTTCCCCTATATGGGTTTCTATTAAAATTCAGGGCCCCCCT
TTTTAACACCTCGGGTTGGGAAAACCCCGGGCTTTCCCCCATTAACCCCC
TTTGCCCCCCCTCCCCCTTTCCCCCGCGGGGGTAAAAAAGAAAAAGCCCC
CCCCCCTTTCCCCCTTCCAAAAAATTTGCCCCCCCCGGGAATGGGAAAAG
GAAAAATGTGAACCCTTAAAAAATTTTTTAAAAAAATTCCCCCCTTAATT
TTTTTTTTAACACCCCCTTCCTTTTTTTTAACCCCAAAAGGCGCCAAAAA
TCGCGAAAAAAACCCCTTTA
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