DY256911

Overview
NameDY256911
Unique NameDY256911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1120
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9751 contig Ccv1_Contig9751:4..1123. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSEAB (Regulator of ribonuclease activity A OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rraA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.419e-28
Identity = 63/123 (51.22%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N L++E +++ G  +VLVVDGGGSLR A+LG     +A  NGW GIVV GCIRDVD I   D+GV+ALAS P+K +K+GIG+ +V +T GG     GE++YAD +GI++S   L +
Sbjct:   38 TIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGGVTFRPGEFVYADNNGIIVSPQALKM 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSEA8 (Regulator of ribonuclease activity A OS=Pseudomonas aeruginosa (strain LESB58) GN=rraA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.419e-28
Identity = 63/123 (51.22%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N L++E +++ G  +VLVVDGGGSLR A+LG     +A  NGW GIVV GCIRDVD I   D+GV+ALAS P+K +K+GIG+ +V +T GG     GE++YAD +GI++S   L +
Sbjct:   38 TIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGGVTFRPGEFVYADNNGIIVSPQALKM 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSEA7 (Regulator of ribonuclease activity A OS=Pseudomonas aeruginosa (strain PA7) GN=rraA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.854e-28
Identity = 63/123 (51.22%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N L++E +++ G  +VLVVDGGGSLR A+LG     +A  NGW GIVV GCIRDVD I   ++GV+ALAS PMK +K+GIG+ +V +T GG     GE++YAD +GI++S   L++
Sbjct:   38 TIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTELGVQALASHPMKTDKRGIGDLNVVVTFGGVTFRPGEFVYADNNGIIVSPQALNM 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_LARHH (Regulator of ribonuclease activity A OS=Laribacter hongkongensis (strain HLHK9) GN=rraA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.129e-28
Identity = 62/117 (52.99%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 351
            TLKVF+ N  +RE L E G  RVLVVDGGGS RCA++G      A  NGWAGIVV GCIRD   +    +GVRALA+ P+K+ K G+GE+ + +T  G     G+WLYAD DG++ S
Sbjct:   38 TLKVFEDNSRVREMLSEPGEGRVLVVDGGGSRRCALVGDQLGALAVRNGWAGIVVYGCIRDSVALGLLPLGVRALATHPLKSVKNGVGERELAVTFDGATFRPGDWLYADEDGVITS 154          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSEFS (Regulator of ribonuclease activity A OS=Pseudomonas fluorescens (strain SBW25) GN=rraA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.393e-28
Identity = 61/123 (49.59%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            TLK F+ N L++E  ++ G  +VLVVDGGGSLR A+LG     +A  NGW G+V+ GCIRDVD I   D+GV+ALAS PMK +K+GIG+ +V +T  G     GE++YAD +G+++S + L +
Sbjct:   39 TLKCFEDNSLVKEQADQPGAGKVLVVDGGGSLRRALLGDMIAEKAAKNGWEGLVIYGCIRDVDVIAQTDLGVQALASHPMKTDKRGIGDLNVVVTFAGVTFRPGEYIYADNNGVIVSPSPLKM 161          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSEP1 (Regulator of ribonuclease activity A OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rraA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 9.199e-28
Identity = 60/123 (48.78%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N L++E +E  G  +VLVVDGGGSLR A+LG     +A  NGW G+V+ GC+RDVD +   D+GV+ALAS PMK +K+GIG+ +V +T  G     GE++YAD +G+L+S + L +
Sbjct:   39 TIKCFEDNSLVKEQVELDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGLVIYGCVRDVDVLIQTDVGVQALASHPMKTDKRGIGDLNVVVTFAGVTFRPGEYVYADNNGVLVSPSPLKM 161          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSE14 (Regulator of ribonuclease activity A OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rraA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 9.199e-28
Identity = 63/125 (50.40%), Postives = 88/125 (70.40%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLE--EKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N L++E +E   KG  +VLVVDGGGSLRCA+LG     +A  +GW G+++ GCIRDVD I   D+GV+ALAS P K  K+GIG+ +V +T GG     GE+LYAD +G++IS + L++
Sbjct:   38 TVKCFEDNSLVKEQVELDGKGKGKVLVVDGGGSLRCALLGDMLAEKAARSGWEGMLIYGCIRDVDVIAQTDLGVQALASHPKKTEKRGIGDLNVLVTFGGVTFRPGEYLYADNNGVIISPSPLTM 162          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_CHRVO (Regulator of ribonuclease activity A OS=Chromobacterium violaceum GN=rraA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 9.199e-28
Identity = 58/117 (49.57%), Postives = 82/117 (70.09%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 351
            TLK+F+ N L+R+ L E GN RVLVVDGGGS RCA+LG      A  NGWAG+V++GC+RD   +    +GV+ALA+ P K+ K+  G++ +P+ + G  I  G+WLYAD DG+++S
Sbjct:   38 TLKLFEDNSLVRQMLGEPGNGRVLVVDGGGSRRCALLGDQLGELAVKNGWAGLVIDGCVRDSAALGKLPLGVKALAAHPRKSVKRDSGQRDLPLRVAGCDILPGQWLYADEDGVIVS 154          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSEPW (Regulator of ribonuclease activity A OS=Pseudomonas putida (strain W619) GN=rraA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.201e-27
Identity = 58/123 (47.15%), Postives = 85/123 (69.11%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N  ++E +E  G  +VLVVDGGGSLRCA+LG     +A  NGW G+V+ GC+RDVD +    +GV+ALAS PMK +K+GIG+ +V +T  G     GE++YAD +G+++S + L +
Sbjct:   39 TIKCFEDNSRVKEQVELDGKGKVLVVDGGGSLRCALLGDMLAEKAAKNGWEGLVIYGCVRDVDVLIQTSVGVQALASHPMKTDKRGIGDLNVAVTFAGVTFRPGEYVYADNNGVIVSPSPLEM 161          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSEPK (Regulator of ribonuclease activity A OS=Pseudomonas putida (strain KT2440) GN=rraA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.569e-27
Identity = 60/123 (48.78%), Postives = 85/123 (69.11%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N L++E +E  G  +VLVVDGGGSLR A+LG     +A  NGW G+V+ GC+RDVD +   D+GV+ALAS PMK +K+GIG+ +V +T  G     GE++YAD +G+L+S   L +
Sbjct:   39 TIKCFEDNSLVKEQVELDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGLVIYGCVRDVDVLIQTDVGVQALASHPMKTDKRGIGDLNVVVTFAGVTFRPGEYVYADNNGVLVSPKPLKM 161          
The following BLAST results are available for this feature:
BLAST of DY256911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
RRAA_PSEAB1.419e-2851.22Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSEA81.419e-2851.22Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSEA71.854e-2851.22Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_LARHH4.129e-2852.99Regulator of ribonuclease activity A OS=Laribacter... [more]
RRAA_PSEFS5.393e-2849.59Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSEP19.199e-2848.78Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSE149.199e-2850.40Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_CHRVO9.199e-2849.57Regulator of ribonuclease activity A OS=Chromobact... [more]
RRAA_PSEPW1.201e-2747.15Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSEPK1.569e-2748.78Regulator of ribonuclease activity A OS=Pseudomona... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DF03ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256911 ID=DY256911; Name=DY256911; organism=Citrus clementina; type=EST; length=1120bp
ACCCTCAAGGTATTTCAATTTAATGTTTTGATTCGTGAGTTTCTTGAGGA
GAAGGGTAATTTAAGAGTTCTTGTTGTAGATGGGGGTGGGAGTTTGCGGT
GCGCTATATTGGGGGGTAACCCTGTCGTACAAGCCCACAATAACGGATGG
GCTGGAATAGTTGTGAATGGGTGTATTAGGGATGTTGATGAAATTAATGG
GTGTGATATTGGTGTGAGAGCACTGGCTTCTCGTCCCATGAAAGCCAATA
AGAAGGGGATTGGGGAGAAACATGTGCCAATAACTATTGGTGGGACAAGA
ATCAGTGATGGCGAATGGCTTTATGCTGACACAGATGGCATCTTGATTTC
TCGGGCAGAGTTATCTGTATGAGTCCTTTCCTTTGCAAATACCAAAACTG
CAGGTGCTTTTCCTGGAATGTATTCCCCTACTATTATGCCTAACTTGTTT
TCCCGAGCCCATTTATTAATTTTAGATGAACTTGTGTGGTGTGTCAAAAA
TCTATCCGACTTCGTTTTGATCTGTTTGTTTATTGCACATCAAATTGGAA
TGTTGTTTCTGGTGATGATGATAATAATGATTCCGATAAGAATAAATTAT
TATTGCTCTTTTGGCCTTTTGAGGGTAGACTCATGAAGTCCTTTGAAAAA
GTAAACCAGTTAAAAAAAAAACAAAAAAGCCAAAACAATTTCCAATCTCC
TACCCAATCTCCACAAAAATTAAACCCTTGGGGCCCCCCCCCGCCCAATT
TAAACTCAAAACCCAGAAAATTTATCCCTTCGGGCCCCATTTCCAACTCC
CTTTACCAATTTCCCCTATATGGGTTTCTATTAAAATTCAGGGCCCCCCT
TTTTAACACCTCGGGTTGGGAAAACCCCGGGCTTTCCCCCATTAACCCCC
TTTGCCCCCCCTCCCCCTTTCCCCCGCGGGGGTAAAAAAGAAAAAGCCCC
CCCCCCTTTCCCCCTTCCAAAAAATTTGCCCCCCCCGGGAATGGGAAAAG
GAAAAATGTGAACCCTTAAAAAATTTTTTAAAAAAATTCCCCCCTTAATT
TTTTTTTTAACACCCCCTTCCTTTTTTTTAACCCCAAAAGGCGCCAAAAA
TCGCGAAAAAAACCCCTTTA
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