DY256911

Overview
NameDY256911
Unique NameDY256911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1120
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9751 contig Ccv1_Contig9751:4..1123. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA2_VIBVY (Regulator of ribonuclease activity A protein 2 OS=Vibrio vulnificus (strain YJ016) GN=rraA2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.569e-27
Identity = 63/122 (51.64%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELS 366
            T+K F+ N LIRE LE+ G  RVL+VDGGGSLR A+L G     A  N W GIVV GC+R+VDE+   +IG++ALAS P+ A  +G+GE  VP+  GG      ++LYADT GI++S+  LS
Sbjct:   38 TVKCFEDNALIRETLEQDGVGRVLLVDGGGSLRRALLDGELAAIAEENEWEGIVVYGCVREVDELEDMNIGIQALASIPVSAAMQGVGEVDVPVNFGGVTFLPEDYLYADTTGIILSQEPLS 159          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSEE4 (Regulator of ribonuclease activity A OS=Pseudomonas entomophila (strain L48) GN=rraA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.677e-27
Identity = 58/123 (47.15%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N L++E ++  G  +VLVVDGGGSLR A+LG     +A  NGW G+V+ GC+RDVD +   D+GV+ALAS PMK +K+GIG+ +V +T  G     GE++YAD +G+++S + L +
Sbjct:   39 TIKCFEDNSLVKEQVDLDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGLVIYGCVRDVDVLVQTDVGVQALASHPMKTDKRGIGDLNVAVTFAGVTFRPGEYVYADNNGVIVSPSPLKM 161          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA2_VIBVU (Regulator of ribonuclease activity A protein 2 OS=Vibrio vulnificus GN=rraA2 PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 2.677e-27
Identity = 63/122 (51.64%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELS 366
            T+K F+ N LIRE LE+ G  RVL+VDGGGSLR A+L G     A  N W GIVV GC+R+VDE+   +IG++ALAS P+ A  +G+GE  VP+  GG      ++LYADT GI++S+  LS
Sbjct:   38 TVKCFEDNALIRETLEQDGVGRVLLVDGGGSLRRALLDGELAAIAEENEWEGIVVYGCVREVDELEDMNIGIQALASIPVGAAMQGVGEVDVPVNFGGVTFLPEDYLYADTTGIILSQEPLS 159          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSEU5 (Regulator of ribonuclease activity A OS=Pseudomonas stutzeri (strain A1501) GN=rraA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.496e-27
Identity = 57/123 (46.34%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N L+++ ++  G  +V+VVDGGGSLR A+LG     +A  NGW G+++ GC+RDVD +   ++GV+ALAS PMK +K+GIG+ +VP+T  G     GE++YAD +GI++S   LS+
Sbjct:   38 TIKCFEDNSLVKDQVDVDGTGKVMVVDGGGSLRRALLGDMLAEKAARNGWEGLIIYGCVRDVDVLAQTELGVQALASHPMKTDKRGIGDLNVPVTFCGVTFRPGEYVYADNNGIIVSPEPLSM 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSEPG (Regulator of ribonuclease activity A OS=Pseudomonas putida (strain GB-1) GN=rraA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.496e-27
Identity = 59/123 (47.97%), Postives = 85/123 (69.11%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N L++E +E  G  +VLVVDGGGSLR A+LG     +A  NGW G+V+ GC+RDVD +   D+GV+ALAS PMK +K+GIG+ +V +   G     GE++YAD +G+L+S + L +
Sbjct:   39 TIKCFEDNSLVKEQVELDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGLVIYGCVRDVDVLIQTDVGVQALASHPMKTDKRGIGDLNVVVAFAGVTFRPGEYVYADNNGVLVSPSPLEM 161          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_HAHCH (Regulator of ribonuclease activity A OS=Hahella chejuensis (strain KCTC 2396) GN=rraA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.266e-26
Identity = 55/123 (44.72%), Postives = 85/123 (69.11%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N ++++ +++ G+ +V+VVDGGGS R A+LG     +A  NGW GI++ GCIRDVD I   D+GV+AL + PMK +K+GIG+ +  IT GG     G ++YAD +G+++S   LS+
Sbjct:   38 TVKCFEDNSVVKQQVDQPGHGKVMVVDGGGSKRAALLGDMLAEKAAANGWEGIIIYGCIRDVDVIRQTDLGVQALGTHPMKTDKRGIGDLNADITFGGVTFKPGHYVYADNNGVIVSPEPLSM 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_AZOSE (Regulator of ribonuclease activity A OS=Azoarcus sp. (strain EbN1) GN=rraA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.266e-26
Identity = 57/121 (47.11%), Postives = 80/121 (66.12%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 363
            TLKVF+ N L+R  LE  G  +VLVVDGGGS+RCA++G    +    N WAG++V GCIRD   I   ++GV AL S P+K+ KKG G+  + +T GG   + G ++YAD DG+++S + L
Sbjct:   38 TLKVFEDNSLVRTALEGPGQGKVLVVDGGGSMRCALVGDQLALLGVKNQWAGVIVYGCIRDSKAIGTMELGVFALGSHPLKSIKKGAGDVDIAVTFGGVTFTPGHFIYADEDGVVVSESSL 158          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_THET2 (Regulator of ribonuclease activity A OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rraA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.959e-26
Identity = 59/116 (50.86%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 348
            TL+VF+ N L+R+ LEE+G  +VL VDGGGSLR A+LGGN    A   GWAG+VV+G +RD +E+ G  IG+ ALA+ P K+ K+G GE  VP+ + G  +  G +L AD DG+L+
Sbjct:   37 TLRVFEDNALVRKVLEEEGAGQVLFVDGGGSLRTALLGGNLARLAWERGWAGVVVHGAVRDTEELRGVPIGLLALAATPKKSAKEGKGEVDVPLKVLGVEVLPGSFLLADEDGLLL 152          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_THISH (Regulator of ribonuclease activity A OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rraA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.865e-26
Identity = 57/116 (49.14%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 348
            T++ F+ NVL+R+ LE +G  +VLVVDGGGSLRCA+ G      A +NGWAG++VNGCIRDV  I    IGV+AL + P K+ K+G G  +VP++ G      GE ++AD DG+++
Sbjct:   44 TVRCFEDNVLVRQTLEAEGRGKVLVVDGGGSLRCALFGDMLAQTALDNGWAGVIVNGCIRDVAVIVTLPIGVKALGTHPRKSEKRGEGAVNVPVSFGAITFRPGERVFADEDGVVV 159          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_DEIRA (Regulator of ribonuclease activity A OS=Deinococcus radiodurans GN=rraA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.865e-26
Identity = 57/120 (47.50%), Postives = 80/120 (66.67%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAE 360
            TL++ + N L+R+ L+  G  RVLVVDGGGSL CA+LGGN  V    NGW G++++GC+RD  E+   D+G+RALA+ P ++ K   GE+ VP+T  G  I  G+ + AD DG L+  AE
Sbjct:   39 TLRISENNPLVRQTLQTPGAGRVLVVDGGGSLNCALLGGNLGVFGVENGWEGVIIHGCVRDTAELRELDLGIRALAAHPRRSGKLEEGERDVPVTFAGVTIRPGDHVVADEDGWLVLGAE 158          
The following BLAST results are available for this feature:
BLAST of DY256911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
RRAA2_VIBVY1.569e-2751.64Regulator of ribonuclease activity A protein 2 OS=... [more]
RRAA_PSEE42.677e-2747.15Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA2_VIBVU2.677e-2751.64Regulator of ribonuclease activity A protein 2 OS=... [more]
RRAA_PSEU53.496e-2746.34Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSEPG3.496e-2747.97Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_HAHCH2.266e-2644.72Regulator of ribonuclease activity A OS=Hahella ch... [more]
RRAA_AZOSE2.266e-2647.11Regulator of ribonuclease activity A OS=Azoarcus s... [more]
RRAA_THET22.959e-2650.86Regulator of ribonuclease activity A OS=Thermus th... [more]
RRAA_THISH3.865e-2649.14Regulator of ribonuclease activity A OS=Thioalkali... [more]
RRAA_DEIRA3.865e-2647.50Regulator of ribonuclease activity A OS=Deinococcu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DF03ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256911 ID=DY256911; Name=DY256911; organism=Citrus clementina; type=EST; length=1120bp
ACCCTCAAGGTATTTCAATTTAATGTTTTGATTCGTGAGTTTCTTGAGGA
GAAGGGTAATTTAAGAGTTCTTGTTGTAGATGGGGGTGGGAGTTTGCGGT
GCGCTATATTGGGGGGTAACCCTGTCGTACAAGCCCACAATAACGGATGG
GCTGGAATAGTTGTGAATGGGTGTATTAGGGATGTTGATGAAATTAATGG
GTGTGATATTGGTGTGAGAGCACTGGCTTCTCGTCCCATGAAAGCCAATA
AGAAGGGGATTGGGGAGAAACATGTGCCAATAACTATTGGTGGGACAAGA
ATCAGTGATGGCGAATGGCTTTATGCTGACACAGATGGCATCTTGATTTC
TCGGGCAGAGTTATCTGTATGAGTCCTTTCCTTTGCAAATACCAAAACTG
CAGGTGCTTTTCCTGGAATGTATTCCCCTACTATTATGCCTAACTTGTTT
TCCCGAGCCCATTTATTAATTTTAGATGAACTTGTGTGGTGTGTCAAAAA
TCTATCCGACTTCGTTTTGATCTGTTTGTTTATTGCACATCAAATTGGAA
TGTTGTTTCTGGTGATGATGATAATAATGATTCCGATAAGAATAAATTAT
TATTGCTCTTTTGGCCTTTTGAGGGTAGACTCATGAAGTCCTTTGAAAAA
GTAAACCAGTTAAAAAAAAAACAAAAAAGCCAAAACAATTTCCAATCTCC
TACCCAATCTCCACAAAAATTAAACCCTTGGGGCCCCCCCCCGCCCAATT
TAAACTCAAAACCCAGAAAATTTATCCCTTCGGGCCCCATTTCCAACTCC
CTTTACCAATTTCCCCTATATGGGTTTCTATTAAAATTCAGGGCCCCCCT
TTTTAACACCTCGGGTTGGGAAAACCCCGGGCTTTCCCCCATTAACCCCC
TTTGCCCCCCCTCCCCCTTTCCCCCGCGGGGGTAAAAAAGAAAAAGCCCC
CCCCCCTTTCCCCCTTCCAAAAAATTTGCCCCCCCCGGGAATGGGAAAAG
GAAAAATGTGAACCCTTAAAAAATTTTTTAAAAAAATTCCCCCCTTAATT
TTTTTTTTAACACCCCCTTCCTTTTTTTTAACCCCAAAAGGCGCCAAAAA
TCGCGAAAAAAACCCCTTTA
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