DY256911

Overview
NameDY256911
Unique NameDY256911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1120
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9751 contig Ccv1_Contig9751:4..1123. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSEFL (Regulator of ribonuclease activity A OS=Pseudomonas fluorescens GN=rraA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 5.048e-26
Identity = 56/123 (45.53%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N L++E  ++ G  +VLVVDGGGSLR A+LG     +A  NGW G+V+ GC+RDVD +   D+GV+ALA  PMK +K+GIG+ +V +T        GE++YAD +G+++S + L +
Sbjct:   39 TIKCFEDNSLVKEQADQPGAGKVLVVDGGGSLRRALLGDMIAEKAAKNGWEGLVIYGCVRDVDVLAQTDLGVQALAPHPMKTDKRGIGDLNVVVTFASVTFRPGEYVYADNNGVIVSPSPLKM 161          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_THET8 (Regulator of ribonuclease activity A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rraA PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.505e-25
Identity = 58/116 (50.00%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 348
            TL+VF+ N L+R+ LEE+G  +VL VDGGGSLR A+LGGN    A   GWAG+VV+G +RD +E+    IG+ ALA+ P K+ K+G GE  VP+ + G  +  G +L AD DG+L+
Sbjct:   37 TLRVFEDNALVRKVLEEEGAGQVLFVDGGGSLRTALLGGNLARLAWEKGWAGVVVHGAVRDTEELREVPIGLLALAATPKKSAKEGKGEVDVPLKVLGVEVLPGSFLLADEDGLLL 152          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_METCA (Regulator of ribonuclease activity A OS=Methylococcus capsulatus GN=rraA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.273e-25
Identity = 58/121 (47.93%), Postives = 81/121 (66.94%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 363
            TLKVF+ +VLIRE L ++ + RVLV+DGG S RCA+LGGN    A +NGW GI+V GC+RD  E+    IG+RAL + P+ ++K+G G++   IT          +LYAD DGI++S  +L
Sbjct:   40 TLKVFEDSVLIRETLAQEVDGRVLVIDGGASHRCALLGGNLARLAADNGWQGIIVYGCVRDSVELGTVPIGIRALHTHPLDSHKRGGGDRDCLITFASVNFRTDHYLYADEDGIVVSEEKL 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA2_VIBPA (Regulator of ribonuclease activity A protein 2 OS=Vibrio parahaemolyticus GN=rraA2 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 5.581e-25
Identity = 57/123 (46.34%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N LIRE LE+ G  RVL++DGGGSLR A++       A  N W GIVV GC+R+VDE+   ++G++ALAS P+ A  +GIGE  VP+  GG      +++YAD  GI++S   L++
Sbjct:   38 TIKCFEDNSLIRETLEQDGLGRVLLIDGGGSLRKALIDAEIAAIAEENEWEGIVVYGCVREVDELEDMNLGIQALASIPVGAANQGIGELDVPVNFGGVSFLPEDYIYADNTGIILSPEPLNI 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_RHOCS (Regulator of ribonuclease activity A OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rraA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.243e-24
Identity = 56/121 (46.28%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 363
            T++  Q N L++  L   G+  VLVVDGGGSLR A++G         NGWAGIVV+G IRD + I G DIG++AL S P K+ K G GE   P+  GG   + G WLY+D DG++++   L
Sbjct:   38 TVRCHQDNALLKSLLSTPGDGAVLVVDGGGSLRTALVGDLIAGLGVKNGWAGIVVHGAIRDSEAIGGLDIGLKALGSNPRKSTKTGAGEADRPVAFGGCTFTPGHWLYSDADGVVVAPRRL 158          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_MYCPA (Regulator of ribonuclease activity A OS=Mycobacterium paratuberculosis GN=rraA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.624e-24
Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 351
            T++ FQ N L++  L E G   VLVVDGGGSL  A++G      A  NGWAG++VNG +RD   + G DIGV+AL + P K+ K G GE+ V IT+GG   + G+  Y+D DGI+++
Sbjct:   41 TVRCFQDNALLKSVLSEPGGGGVLVVDGGGSLHTALVGDVIAELARANGWAGLIVNGAVRDSAALRGMDIGVKALGTNPRKSTKTGAGERDVDITLGGVTFTPGDIAYSDDDGIVVA 157          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_MYCA1 (Regulator of ribonuclease activity A OS=Mycobacterium avium (strain 104) GN=rraA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.624e-24
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRA 357
            T++ FQ N L++  L E G   VLVVDGGGSL  A++G      A  NGWAG++VNG +RD   + G DIGV+AL + P K+ K G GE+ V IT+GG   + G+  Y+D DGI++  A
Sbjct:   41 TVRCFQDNALLKSVLSEPGGGGVLVVDGGGSLHTALVGDVIAELARANGWAGLIVNGAVRDSAALRGMDIGVKALGTNPRKSTKTGAGERDVDITLGGVTFTPGDIAYSDDDGIVVVAA 159          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_RHOFD (Regulator of ribonuclease activity A OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rraA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.121e-24
Identity = 56/129 (43.41%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNL--------RVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 363
            T+K F+ N  ++  +E  G          +VLVVDGGGSLR A+LGGN    A  NGWAG+V++GC+RDV E+    +G+RALAS P+   K+G G+  + + I G  +  G+WLYAD DG++++   L
Sbjct:   44 TVKCFEDNSSVKAAVESVGYQETPAGRVGKVLVVDGGGSLRRALLGGNLGAAAARNGWAGVVIDGCVRDVSELAAVGLGIRALASMPLPTEKRGEGQSDLALQIQGVWVRPGDWLYADEDGMVLAAGRL 172          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_MYCLE (Regulator of ribonuclease activity A OS=Mycobacterium leprae GN=rraA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.617e-24
Identity = 52/116 (44.83%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 348
            T++ FQ N L++  L +     VLVVDG GSL  A++G      AH+NGWAG++VNG +RD   + G DIG++AL + P K+ K G GE+HV + +GG     GE +Y+D DGI++
Sbjct:   41 TVRCFQDNALLKSVLSQTSAGGVLVVDGAGSLHTALVGDVIAELAHSNGWAGLIVNGAVRDAAALRGIDIGIKALGTNPRKSTKIGTGERHVEVNLGGVTFVPGEVVYSDDDGIVV 156          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_MYCLB (Regulator of ribonuclease activity A OS=Mycobacterium leprae (strain Br4923) GN=rraA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.617e-24
Identity = 52/116 (44.83%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 348
            T++ FQ N L++  L +     VLVVDG GSL  A++G      AH+NGWAG++VNG +RD   + G DIG++AL + P K+ K G GE+HV + +GG     GE +Y+D DGI++
Sbjct:   41 TVRCFQDNALLKSVLSQTSAGGVLVVDGAGSLHTALVGDVIAELAHSNGWAGLIVNGAVRDAAALRGIDIGIKALGTNPRKSTKIGTGERHVEVNLGGVTFVPGEVVYSDDDGIVV 156          
The following BLAST results are available for this feature:
BLAST of DY256911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
RRAA_PSEFL5.048e-2645.53Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_THET82.505e-2550.00Regulator of ribonuclease activity A OS=Thermus th... [more]
RRAA_METCA4.273e-2547.93Regulator of ribonuclease activity A OS=Methylococ... [more]
RRAA2_VIBPA5.581e-2546.34Regulator of ribonuclease activity A protein 2 OS=... [more]
RRAA_RHOCS1.243e-2446.28Regulator of ribonuclease activity A OS=Rhodospiri... [more]
RRAA_MYCPA1.624e-2447.01Regulator of ribonuclease activity A OS=Mycobacter... [more]
RRAA_MYCA11.624e-2447.06Regulator of ribonuclease activity A OS=Mycobacter... [more]
RRAA_RHOFD2.121e-2443.41Regulator of ribonuclease activity A OS=Rhodoferax... [more]
RRAA_MYCLE3.617e-2444.83Regulator of ribonuclease activity A OS=Mycobacter... [more]
RRAA_MYCLB3.617e-2444.83Regulator of ribonuclease activity A OS=Mycobacter... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DF03ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256911 ID=DY256911; Name=DY256911; organism=Citrus clementina; type=EST; length=1120bp
ACCCTCAAGGTATTTCAATTTAATGTTTTGATTCGTGAGTTTCTTGAGGA
GAAGGGTAATTTAAGAGTTCTTGTTGTAGATGGGGGTGGGAGTTTGCGGT
GCGCTATATTGGGGGGTAACCCTGTCGTACAAGCCCACAATAACGGATGG
GCTGGAATAGTTGTGAATGGGTGTATTAGGGATGTTGATGAAATTAATGG
GTGTGATATTGGTGTGAGAGCACTGGCTTCTCGTCCCATGAAAGCCAATA
AGAAGGGGATTGGGGAGAAACATGTGCCAATAACTATTGGTGGGACAAGA
ATCAGTGATGGCGAATGGCTTTATGCTGACACAGATGGCATCTTGATTTC
TCGGGCAGAGTTATCTGTATGAGTCCTTTCCTTTGCAAATACCAAAACTG
CAGGTGCTTTTCCTGGAATGTATTCCCCTACTATTATGCCTAACTTGTTT
TCCCGAGCCCATTTATTAATTTTAGATGAACTTGTGTGGTGTGTCAAAAA
TCTATCCGACTTCGTTTTGATCTGTTTGTTTATTGCACATCAAATTGGAA
TGTTGTTTCTGGTGATGATGATAATAATGATTCCGATAAGAATAAATTAT
TATTGCTCTTTTGGCCTTTTGAGGGTAGACTCATGAAGTCCTTTGAAAAA
GTAAACCAGTTAAAAAAAAAACAAAAAAGCCAAAACAATTTCCAATCTCC
TACCCAATCTCCACAAAAATTAAACCCTTGGGGCCCCCCCCCGCCCAATT
TAAACTCAAAACCCAGAAAATTTATCCCTTCGGGCCCCATTTCCAACTCC
CTTTACCAATTTCCCCTATATGGGTTTCTATTAAAATTCAGGGCCCCCCT
TTTTAACACCTCGGGTTGGGAAAACCCCGGGCTTTCCCCCATTAACCCCC
TTTGCCCCCCCTCCCCCTTTCCCCCGCGGGGGTAAAAAAGAAAAAGCCCC
CCCCCCTTTCCCCCTTCCAAAAAATTTGCCCCCCCCGGGAATGGGAAAAG
GAAAAATGTGAACCCTTAAAAAATTTTTTAAAAAAATTCCCCCCTTAATT
TTTTTTTTAACACCCCCTTCCTTTTTTTTAACCCCAAAAGGCGCCAAAAA
TCGCGAAAAAAACCCCTTTA
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