DY256911
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PSEFL (Regulator of ribonuclease activity A OS=Pseudomonas fluorescens GN=rraA PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 5.048e-26 Identity = 56/123 (45.53%), Postives = 84/123 (68.29%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369 T+K F+ N L++E ++ G +VLVVDGGGSLR A+LG +A NGW G+V+ GC+RDVD + D+GV+ALA PMK +K+GIG+ +V +T GE++YAD +G+++S + L + Sbjct: 39 TIKCFEDNSLVKEQADQPGAGKVLVVDGGGSLRRALLGDMIAEKAAKNGWEGLVIYGCVRDVDVLAQTDLGVQALAPHPMKTDKRGIGDLNVVVTFASVTFRPGEYVYADNNGVIVSPSPLKM 161
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_THET8 (Regulator of ribonuclease activity A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rraA PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 2.505e-25 Identity = 58/116 (50.00%), Postives = 80/116 (68.97%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 348 TL+VF+ N L+R+ LEE+G +VL VDGGGSLR A+LGGN A GWAG+VV+G +RD +E+ IG+ ALA+ P K+ K+G GE VP+ + G + G +L AD DG+L+ Sbjct: 37 TLRVFEDNALVRKVLEEEGAGQVLFVDGGGSLRTALLGGNLARLAWEKGWAGVVVHGAVRDTEELREVPIGLLALAATPKKSAKEGKGEVDVPLKVLGVEVLPGSFLLADEDGLLL 152
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_METCA (Regulator of ribonuclease activity A OS=Methylococcus capsulatus GN=rraA PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 4.273e-25 Identity = 58/121 (47.93%), Postives = 81/121 (66.94%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 363 TLKVF+ +VLIRE L ++ + RVLV+DGG S RCA+LGGN A +NGW GI+V GC+RD E+ IG+RAL + P+ ++K+G G++ IT +LYAD DGI++S +L Sbjct: 40 TLKVFEDSVLIRETLAQEVDGRVLVIDGGASHRCALLGGNLARLAADNGWQGIIVYGCVRDSVELGTVPIGIRALHTHPLDSHKRGGGDRDCLITFASVNFRTDHYLYADEDGIVVSEEKL 160
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA2_VIBPA (Regulator of ribonuclease activity A protein 2 OS=Vibrio parahaemolyticus GN=rraA2 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 5.581e-25 Identity = 57/123 (46.34%), Postives = 81/123 (65.85%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369 T+K F+ N LIRE LE+ G RVL++DGGGSLR A++ A N W GIVV GC+R+VDE+ ++G++ALAS P+ A +GIGE VP+ GG +++YAD GI++S L++ Sbjct: 38 TIKCFEDNSLIRETLEQDGLGRVLLIDGGGSLRKALIDAEIAAIAEENEWEGIVVYGCVREVDELEDMNLGIQALASIPVGAANQGIGELDVPVNFGGVSFLPEDYIYADNTGIILSPEPLNI 160
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_RHOCS (Regulator of ribonuclease activity A OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rraA PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.243e-24 Identity = 56/121 (46.28%), Postives = 75/121 (61.98%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 363 T++ Q N L++ L G+ VLVVDGGGSLR A++G NGWAGIVV+G IRD + I G DIG++AL S P K+ K G GE P+ GG + G WLY+D DG++++ L Sbjct: 38 TVRCHQDNALLKSLLSTPGDGAVLVVDGGGSLRTALVGDLIAGLGVKNGWAGIVVHGAIRDSEAIGGLDIGLKALGSNPRKSTKTGAGEADRPVAFGGCTFTPGHWLYSDADGVVVAPRRL 158
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_MYCPA (Regulator of ribonuclease activity A OS=Mycobacterium paratuberculosis GN=rraA PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.624e-24 Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 351 T++ FQ N L++ L E G VLVVDGGGSL A++G A NGWAG++VNG +RD + G DIGV+AL + P K+ K G GE+ V IT+GG + G+ Y+D DGI+++ Sbjct: 41 TVRCFQDNALLKSVLSEPGGGGVLVVDGGGSLHTALVGDVIAELARANGWAGLIVNGAVRDSAALRGMDIGVKALGTNPRKSTKTGAGERDVDITLGGVTFTPGDIAYSDDDGIVVA 157
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_MYCA1 (Regulator of ribonuclease activity A OS=Mycobacterium avium (strain 104) GN=rraA PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.624e-24 Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRA 357 T++ FQ N L++ L E G VLVVDGGGSL A++G A NGWAG++VNG +RD + G DIGV+AL + P K+ K G GE+ V IT+GG + G+ Y+D DGI++ A Sbjct: 41 TVRCFQDNALLKSVLSEPGGGGVLVVDGGGSLHTALVGDVIAELARANGWAGLIVNGAVRDSAALRGMDIGVKALGTNPRKSTKTGAGERDVDITLGGVTFTPGDIAYSDDDGIVVVAA 159
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_RHOFD (Regulator of ribonuclease activity A OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rraA PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 2.121e-24 Identity = 56/129 (43.41%), Postives = 81/129 (62.79%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNL--------RVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 363 T+K F+ N ++ +E G +VLVVDGGGSLR A+LGGN A NGWAG+V++GC+RDV E+ +G+RALAS P+ K+G G+ + + I G + G+WLYAD DG++++ L Sbjct: 44 TVKCFEDNSSVKAAVESVGYQETPAGRVGKVLVVDGGGSLRRALLGGNLGAAAARNGWAGVVIDGCVRDVSELAAVGLGIRALASMPLPTEKRGEGQSDLALQIQGVWVRPGDWLYADEDGMVLAAGRL 172
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_MYCLE (Regulator of ribonuclease activity A OS=Mycobacterium leprae GN=rraA PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 3.617e-24 Identity = 52/116 (44.83%), Postives = 75/116 (64.66%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 348 T++ FQ N L++ L + VLVVDG GSL A++G AH+NGWAG++VNG +RD + G DIG++AL + P K+ K G GE+HV + +GG GE +Y+D DGI++ Sbjct: 41 TVRCFQDNALLKSVLSQTSAGGVLVVDGAGSLHTALVGDVIAELAHSNGWAGLIVNGAVRDAAALRGIDIGIKALGTNPRKSTKIGTGERHVEVNLGGVTFVPGEVVYSDDDGIVV 156
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_MYCLB (Regulator of ribonuclease activity A OS=Mycobacterium leprae (strain Br4923) GN=rraA PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 3.617e-24 Identity = 52/116 (44.83%), Postives = 75/116 (64.66%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 348 T++ FQ N L++ L + VLVVDG GSL A++G AH+NGWAG++VNG +RD + G DIG++AL + P K+ K G GE+HV + +GG GE +Y+D DGI++ Sbjct: 41 TVRCFQDNALLKSVLSQTSAGGVLVVDGAGSLHTALVGDVIAELAHSNGWAGLIVNGAVRDAAALRGIDIGIKALGTNPRKSTKIGTGERHVEVNLGGVTFVPGEVVYSDDDGIVV 156 The following BLAST results are available for this feature:
BLAST of DY256911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 185
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Sequences
The
following sequences are available for this feature:
EST sequence >DY256911 ID=DY256911; Name=DY256911; organism=Citrus clementina; type=EST; length=1120bpback to top |