DY256911
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA2_VIBCH (Regulator of ribonuclease activity A protein 2 OS=Vibrio cholerae GN=rraA2 PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 4.724e-24 Identity = 56/122 (45.90%), Postives = 79/122 (64.75%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELS 366 T+K ++ N LIRE LE+ G R+L++DGGGSLR A++ A N W GIVV G +R+VDE+ IG++A+AS P+ A +GIGE +P+ GG ++LYAD GI+IS+ LS Sbjct: 38 TIKCYEDNGLIRETLEQDGLGRILLIDGGGSLRRALIDAELAALAEENEWEGIVVYGSVREVDELEEMSIGIQAIASIPVGATSQGIGEVDIPVNFGGVTFLPEDYLYADNTGIIISQEPLS 159
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_ACIAD (Regulator of ribonuclease activity A OS=Acinetobacter sp. (strain ADP1) GN=rraA PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 2.345e-23 Identity = 53/121 (43.80%), Postives = 78/121 (64.46%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 363 T+K F+ N ++E L G +VLVVDGG S+RCA++G A W G+V+ GCIRDVD + D+G+ ALA+ P K+N++GIGE V + GG G ++YAD +GI++S+ +L Sbjct: 48 TVKCFEDNSRVKELLATDGTGKVLVVDGGASMRCALMGDMIAESAVKYHWDGVVIYGCIRDVDALAELDLGIHALAAIPQKSNRQGIGEVGVNLYFGGVTFQAGCYIYADNNGIIVSKQKL 168
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_XANCB (Regulator of ribonuclease activity A OS=Xanthomonas campestris pv. campestris (strain B100) GN=rraA PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 3.062e-23 Identity = 53/126 (42.06%), Postives = 80/126 (63.49%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV*VL 378 T++ + N IRE G+ RVLVVDG GSLR A+ G QA NGWAG++++GC+RDV+ + G +GV ALA+ P + ++ +G+ VP+ G G WLYAD +G++++ A LS+ V+ Sbjct: 37 TVRCVEDNSRIRELASTPGDGRVLVVDGQGSLRHALFGDQIGAQAVANGWAGVLIHGCVRDVEILAGLPLGVLALAACPRRTERRDLGDVDVPVNFAGVAFVPGHWLYADANGVVVAAAPLSLEVV 162
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA2_SHEON (Regulator of ribonuclease activity A protein 2 OS=Shewanella oneidensis GN=rraA2 PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 3.062e-23 Identity = 54/123 (43.90%), Postives = 78/123 (63.41%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369 T+K F+ N LI + L+E G +VL+VDGGGSLR A++ G A +N W GI+V G +RDVD + DIG++ALAS P+ A+ +GE +P+ GG G+ +YAD GI++S L + Sbjct: 38 TIKCFEDNGLITDVLQEDGQGKVLLVDGGGSLRRALIDGTIAELAVSNNWEGIIVYGSVRDVDALEELDIGIQALASIPVGADGNSVGEVDIPVNFGGVTFLPGDHIYADNTGIILSPEPLDI 160
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_SHEDO (Regulator of ribonuclease activity A OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rraA PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 6.822e-23 Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369 T+K F+ N LI + L+E G +VL+VDGGGSLR A++ + A NN W GI+V G +RDVD + D+G++ALAS P+ A G+GE +P+ GG G+ +YAD G+++S L + Sbjct: 38 TVKCFEDNGLIADALQEDGEGKVLLVDGGGSLRRALIDASIAQIAVNNNWEGIIVYGSVRDVDALEELDLGIQALASIPVGAEGNGVGEIELPVNFGGVTFLPGDHIYADNTGVILSPEPLDI 160
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_NOCFA (Regulator of ribonuclease activity A OS=Nocardia farcinica GN=rraA PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 6.822e-23 Identity = 53/120 (44.17%), Postives = 79/120 (65.83%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAE 360 T++ FQ N+L+++ L E G +VLVVDGG S+ A++G + +NGWAG++VNG +RD + DIG++AL + P K+ + G GE+ VP+ GG GE LY+D DGI++ RAE Sbjct: 47 TIRCFQDNLLVKQTLGEPGEGKVLVVDGGASVHTALVGDIIAGRGVDNGWAGVIVNGAVRDSAILRTLDIGIKALGTNPRKSTQTGSGERDVPVEFGGVTFVPGEMLYSDHDGIVV-RAE 165
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_XANCP (Regulator of ribonuclease activity A OS=Xanthomonas campestris pv. campestris GN=rraA PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.164e-22 Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369 T++ + N IRE G+ RVLVVDG GSLR A+ G QA NGWAG++++GC+RDV+ + G +GV ALA+ P + ++ +G+ VP+ G G WLYAD +G++++ LS+ Sbjct: 37 TVRCVEDNSRIRELASTPGDGRVLVVDGQGSLRQALFGDQIGAQAVANGWAGVLIHGCVRDVEILAGLPLGVLALAACPRRTERRDLGDVDVPVNFAGVAFVPGHWLYADANGVVVAATPLSL 159
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_XANC8 (Regulator of ribonuclease activity A OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rraA PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.164e-22 Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369 T++ + N IRE G+ RVLVVDG GSLR A+ G QA NGWAG++++GC+RDV+ + G +GV ALA+ P + ++ +G+ VP+ G G WLYAD +G++++ LS+ Sbjct: 37 TVRCVEDNSRIRELASTPGDGRVLVVDGQGSLRQALFGDQIGAQAVANGWAGVLIHGCVRDVEILAGLPLGVLALAACPRRTERRDLGDVDVPVNFAGVAFVPGHWLYADANGVVVAATPLSL 159
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_MYCSJ (Regulator of ribonuclease activity A OS=Mycobacterium sp. (strain JLS) GN=rraA PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.164e-22 Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 348 T++ FQ N L++ L E G+ VLV+DG GSL A++G +NGW+G+++NG +RD + DIG++AL + P K+ K G GE+ VP+ GG + G+ Y+D DGI+I Sbjct: 41 TVRCFQDNALLKSVLSEPGDGGVLVIDGDGSLHTALVGDVIAALGRDNGWSGLIINGAVRDASTLRTLDIGIKALGTNPRKSTKTGAGERDVPVEFGGVTFTPGDVAYSDDDGIVI 156
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_MYCSS (Regulator of ribonuclease activity A OS=Mycobacterium sp. (strain MCS) GN=rraA PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.520e-22 Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 1 Query: 1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 348 T++ FQ N L++ L E G+ VLV+DG GSL A++G +NGW+G+++NG +RD + DIG++AL + P K+ K G GE+ VP+ GG + G+ Y+D DGI++ Sbjct: 41 TVRCFQDNALLKSVLSEPGDGGVLVIDGDGSLHTALVGDVIAALGRDNGWSGLIINGAVRDASTLRTLDIGIKALGTNPRKSTKTGAGERDVPVDFGGVTFTPGDVAYSDDDGIVV 156 The following BLAST results are available for this feature:
BLAST of DY256911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 185
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Sequences
The
following sequences are available for this feature:
EST sequence >DY256911 ID=DY256911; Name=DY256911; organism=Citrus clementina; type=EST; length=1120bpback to top |