DY256911

Overview
NameDY256911
Unique NameDY256911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1120
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9751 contig Ccv1_Contig9751:4..1123. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA2_VIBCH (Regulator of ribonuclease activity A protein 2 OS=Vibrio cholerae GN=rraA2 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.724e-24
Identity = 56/122 (45.90%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELS 366
            T+K ++ N LIRE LE+ G  R+L++DGGGSLR A++       A  N W GIVV G +R+VDE+    IG++A+AS P+ A  +GIGE  +P+  GG      ++LYAD  GI+IS+  LS
Sbjct:   38 TIKCYEDNGLIRETLEQDGLGRILLIDGGGSLRRALIDAELAALAEENEWEGIVVYGSVREVDELEEMSIGIQAIASIPVGATSQGIGEVDIPVNFGGVTFLPEDYLYADNTGIIISQEPLS 159          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_ACIAD (Regulator of ribonuclease activity A OS=Acinetobacter sp. (strain ADP1) GN=rraA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.345e-23
Identity = 53/121 (43.80%), Postives = 78/121 (64.46%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 363
            T+K F+ N  ++E L   G  +VLVVDGG S+RCA++G      A    W G+V+ GCIRDVD +   D+G+ ALA+ P K+N++GIGE  V +  GG     G ++YAD +GI++S+ +L
Sbjct:   48 TVKCFEDNSRVKELLATDGTGKVLVVDGGASMRCALMGDMIAESAVKYHWDGVVIYGCIRDVDALAELDLGIHALAAIPQKSNRQGIGEVGVNLYFGGVTFQAGCYIYADNNGIIVSKQKL 168          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_XANCB (Regulator of ribonuclease activity A OS=Xanthomonas campestris pv. campestris (strain B100) GN=rraA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.062e-23
Identity = 53/126 (42.06%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV*VL 378
            T++  + N  IRE     G+ RVLVVDG GSLR A+ G     QA  NGWAG++++GC+RDV+ + G  +GV ALA+ P +  ++ +G+  VP+   G     G WLYAD +G++++ A LS+ V+
Sbjct:   37 TVRCVEDNSRIRELASTPGDGRVLVVDGQGSLRHALFGDQIGAQAVANGWAGVLIHGCVRDVEILAGLPLGVLALAACPRRTERRDLGDVDVPVNFAGVAFVPGHWLYADANGVVVAAAPLSLEVV 162          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA2_SHEON (Regulator of ribonuclease activity A protein 2 OS=Shewanella oneidensis GN=rraA2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.062e-23
Identity = 54/123 (43.90%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N LI + L+E G  +VL+VDGGGSLR A++ G     A +N W GI+V G +RDVD +   DIG++ALAS P+ A+   +GE  +P+  GG     G+ +YAD  GI++S   L +
Sbjct:   38 TIKCFEDNGLITDVLQEDGQGKVLLVDGGGSLRRALIDGTIAELAVSNNWEGIIVYGSVRDVDALEELDIGIQALASIPVGADGNSVGEVDIPVNFGGVTFLPGDHIYADNTGIILSPEPLDI 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_SHEDO (Regulator of ribonuclease activity A OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rraA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.822e-23
Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N LI + L+E G  +VL+VDGGGSLR A++  +    A NN W GI+V G +RDVD +   D+G++ALAS P+ A   G+GE  +P+  GG     G+ +YAD  G+++S   L +
Sbjct:   38 TVKCFEDNGLIADALQEDGEGKVLLVDGGGSLRRALIDASIAQIAVNNNWEGIIVYGSVRDVDALEELDLGIQALASIPVGAEGNGVGEIELPVNFGGVTFLPGDHIYADNTGVILSPEPLDI 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_NOCFA (Regulator of ribonuclease activity A OS=Nocardia farcinica GN=rraA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.822e-23
Identity = 53/120 (44.17%), Postives = 79/120 (65.83%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAE 360
            T++ FQ N+L+++ L E G  +VLVVDGG S+  A++G     +  +NGWAG++VNG +RD   +   DIG++AL + P K+ + G GE+ VP+  GG     GE LY+D DGI++ RAE
Sbjct:   47 TIRCFQDNLLVKQTLGEPGEGKVLVVDGGASVHTALVGDIIAGRGVDNGWAGVIVNGAVRDSAILRTLDIGIKALGTNPRKSTQTGSGERDVPVEFGGVTFVPGEMLYSDHDGIVV-RAE 165          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_XANCP (Regulator of ribonuclease activity A OS=Xanthomonas campestris pv. campestris GN=rraA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.164e-22
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T++  + N  IRE     G+ RVLVVDG GSLR A+ G     QA  NGWAG++++GC+RDV+ + G  +GV ALA+ P +  ++ +G+  VP+   G     G WLYAD +G++++   LS+
Sbjct:   37 TVRCVEDNSRIRELASTPGDGRVLVVDGQGSLRQALFGDQIGAQAVANGWAGVLIHGCVRDVEILAGLPLGVLALAACPRRTERRDLGDVDVPVNFAGVAFVPGHWLYADANGVVVAATPLSL 159          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_XANC8 (Regulator of ribonuclease activity A OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rraA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.164e-22
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T++  + N  IRE     G+ RVLVVDG GSLR A+ G     QA  NGWAG++++GC+RDV+ + G  +GV ALA+ P +  ++ +G+  VP+   G     G WLYAD +G++++   LS+
Sbjct:   37 TVRCVEDNSRIRELASTPGDGRVLVVDGQGSLRQALFGDQIGAQAVANGWAGVLIHGCVRDVEILAGLPLGVLALAACPRRTERRDLGDVDVPVNFAGVAFVPGHWLYADANGVVVAATPLSL 159          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_MYCSJ (Regulator of ribonuclease activity A OS=Mycobacterium sp. (strain JLS) GN=rraA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.164e-22
Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 348
            T++ FQ N L++  L E G+  VLV+DG GSL  A++G        +NGW+G+++NG +RD   +   DIG++AL + P K+ K G GE+ VP+  GG   + G+  Y+D DGI+I
Sbjct:   41 TVRCFQDNALLKSVLSEPGDGGVLVIDGDGSLHTALVGDVIAALGRDNGWSGLIINGAVRDASTLRTLDIGIKALGTNPRKSTKTGAGERDVPVEFGGVTFTPGDVAYSDDDGIVI 156          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_MYCSS (Regulator of ribonuclease activity A OS=Mycobacterium sp. (strain MCS) GN=rraA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.520e-22
Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 348
            T++ FQ N L++  L E G+  VLV+DG GSL  A++G        +NGW+G+++NG +RD   +   DIG++AL + P K+ K G GE+ VP+  GG   + G+  Y+D DGI++
Sbjct:   41 TVRCFQDNALLKSVLSEPGDGGVLVIDGDGSLHTALVGDVIAALGRDNGWSGLIINGAVRDASTLRTLDIGIKALGTNPRKSTKTGAGERDVPVDFGGVTFTPGDVAYSDDDGIVV 156          
The following BLAST results are available for this feature:
BLAST of DY256911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
RRAA2_VIBCH4.724e-2445.90Regulator of ribonuclease activity A protein 2 OS=... [more]
RRAA_ACIAD2.345e-2343.80Regulator of ribonuclease activity A OS=Acinetobac... [more]
RRAA_XANCB3.062e-2342.06Regulator of ribonuclease activity A OS=Xanthomona... [more]
RRAA2_SHEON3.062e-2343.90Regulator of ribonuclease activity A protein 2 OS=... [more]
RRAA_SHEDO6.822e-2343.09Regulator of ribonuclease activity A OS=Shewanella... [more]
RRAA_NOCFA6.822e-2344.17Regulator of ribonuclease activity A OS=Nocardia f... [more]
RRAA_XANCP1.164e-2241.46Regulator of ribonuclease activity A OS=Xanthomona... [more]
RRAA_XANC81.164e-2241.46Regulator of ribonuclease activity A OS=Xanthomona... [more]
RRAA_MYCSJ1.164e-2241.38Regulator of ribonuclease activity A OS=Mycobacter... [more]
RRAA_MYCSS1.520e-2240.52Regulator of ribonuclease activity A OS=Mycobacter... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DF03ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256911 ID=DY256911; Name=DY256911; organism=Citrus clementina; type=EST; length=1120bp
ACCCTCAAGGTATTTCAATTTAATGTTTTGATTCGTGAGTTTCTTGAGGA
GAAGGGTAATTTAAGAGTTCTTGTTGTAGATGGGGGTGGGAGTTTGCGGT
GCGCTATATTGGGGGGTAACCCTGTCGTACAAGCCCACAATAACGGATGG
GCTGGAATAGTTGTGAATGGGTGTATTAGGGATGTTGATGAAATTAATGG
GTGTGATATTGGTGTGAGAGCACTGGCTTCTCGTCCCATGAAAGCCAATA
AGAAGGGGATTGGGGAGAAACATGTGCCAATAACTATTGGTGGGACAAGA
ATCAGTGATGGCGAATGGCTTTATGCTGACACAGATGGCATCTTGATTTC
TCGGGCAGAGTTATCTGTATGAGTCCTTTCCTTTGCAAATACCAAAACTG
CAGGTGCTTTTCCTGGAATGTATTCCCCTACTATTATGCCTAACTTGTTT
TCCCGAGCCCATTTATTAATTTTAGATGAACTTGTGTGGTGTGTCAAAAA
TCTATCCGACTTCGTTTTGATCTGTTTGTTTATTGCACATCAAATTGGAA
TGTTGTTTCTGGTGATGATGATAATAATGATTCCGATAAGAATAAATTAT
TATTGCTCTTTTGGCCTTTTGAGGGTAGACTCATGAAGTCCTTTGAAAAA
GTAAACCAGTTAAAAAAAAAACAAAAAAGCCAAAACAATTTCCAATCTCC
TACCCAATCTCCACAAAAATTAAACCCTTGGGGCCCCCCCCCGCCCAATT
TAAACTCAAAACCCAGAAAATTTATCCCTTCGGGCCCCATTTCCAACTCC
CTTTACCAATTTCCCCTATATGGGTTTCTATTAAAATTCAGGGCCCCCCT
TTTTAACACCTCGGGTTGGGAAAACCCCGGGCTTTCCCCCATTAACCCCC
TTTGCCCCCCCTCCCCCTTTCCCCCGCGGGGGTAAAAAAGAAAAAGCCCC
CCCCCCTTTCCCCCTTCCAAAAAATTTGCCCCCCCCGGGAATGGGAAAAG
GAAAAATGTGAACCCTTAAAAAATTTTTTAAAAAAATTCCCCCCTTAATT
TTTTTTTTAACACCCCCTTCCTTTTTTTTAACCCCAAAAGGCGCCAAAAA
TCGCGAAAAAAACCCCTTTA
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