DY256911

Overview
NameDY256911
Unique NameDY256911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1120
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9751 contig Ccv1_Contig9751:4..1123. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_MYCSK (Regulator of ribonuclease activity A OS=Mycobacterium sp. (strain KMS) GN=rraA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.520e-22
Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 348
            T++ FQ N L++  L E G+  VLV+DG GSL  A++G        +NGW+G+++NG +RD   +   DIG++AL + P K+ K G GE+ VP+  GG   + G+  Y+D DGI++
Sbjct:   41 TVRCFQDNALLKSVLSEPGDGGVLVIDGDGSLHTALVGDVIAALGRDNGWSGLIINGAVRDASTLRTLDIGIKALGTNPRKSTKTGAGERDVPVDFGGVTFTPGDVAYSDDDGIVV 156          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_HAES2 (Regulator of ribonuclease activity A OS=Haemophilus somnus (strain 2336) GN=rraA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.520e-22
Identity = 51/123 (41.46%), Postives = 80/123 (65.04%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N LI E LEE G  RVL++DGGG++R A++  N    A +NGW GI+V G IR + ++   +IG++ALA  P+ ++++ IGE  VP+  GG      +++YAD  GI++S+  L +
Sbjct:   38 TIKCFENNGLISEILEENGEGRVLLIDGGGAVRRALIDANLAQLAADNGWEGIIVYGAIRQLQQLENINIGIQALAPIPVGSDEQSIGETDVPVNFGGVTFFPDDYIYADLTGIILSQEPLDL 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_HAES1 (Regulator of ribonuclease activity A OS=Haemophilus somnus (strain 129Pt) GN=rraA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.985e-22
Identity = 51/123 (41.46%), Postives = 80/123 (65.04%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N LI E LEE G  RVL++DGGG++R A++  N    A +NGW GI+V G IR + ++   +IG++ALA  P+ ++++ IGE  VP+  GG      +++YAD  GI++S+  L +
Sbjct:   38 TIKCFENNGLISEILEENGEGRVLLIDGGGAVRRALIDANLAQLAADNGWEGIIVYGAIRQLQQLENINIGIQALAPIPVGSDEQSIGETDVPVNFGGVTFFPDDYVYADLTGIILSQEPLDL 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_YERE8 (Regulator of ribonuclease activity A OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rraA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.422e-22
Identity = 55/123 (44.72%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N L+ + LEE G  RVLVVDGGGS+R A++       A  N W GIVV G +R VDE+   DIG++A+A+ P+ A  +GIGE  + +  GG     G+ LYAD  GI++S   L +
Sbjct:   38 TVKCFEDNGLLFDLLEENGLGRVLVVDGGGSVRRALINAELADLALKNEWEGIVVYGAVRQVDELAELDIGIQAMAAIPVGAADEGIGESDIRVNFGGVTFFSGDHLYADNTGIILSEEPLDI 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_SERP5 (Regulator of ribonuclease activity A OS=Serratia proteamaculans (strain 568) GN=rraA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 5.775e-22
Identity = 53/123 (43.09%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N L+ E LEE G  RVLV+DGGGS+R A++       A  N W GIVV G +R VD++   DIG++A+A+ P+ A  + IGE  + +  GG     G+ LYAD  GI++S   L +
Sbjct:   38 TVKCFEDNGLLFELLEENGRGRVLVIDGGGSVRRALINAELARLATQNEWEGIVVYGAVRQVDDLEEMDIGIQAMAAIPVGAASESIGESDIRVNFGGVTFFSGDHLYADNTGIILSEDPLDI 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_XANAC (Regulator of ribonuclease activity A OS=Xanthomonas axonopodis pv. citri GN=rraA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.543e-22
Identity = 49/123 (39.84%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T++ F+ N  +RE     G+ RVLVVDG GSL+ A+LG      A  NGWAG++++GC+RDV+ +    +GV ALA+ P +  ++ +G+  VP+   G     G WLYAD +G+L++   L++
Sbjct:   37 TVRCFEDNSRVRELAATPGDGRVLVVDGQGSLKHALLGDQIAANAVANGWAGVLIHGCVRDVEILATLPLGVLALAACPRRTERRDLGDVDVPVNFAGVPFVPGHWLYADANGVLVAPQPLAL 159          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_PASMU (Regulator of ribonuclease activity A OS=Pasteurella multocida GN=rraA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.543e-22
Identity = 51/123 (41.46%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N LI + LEE G  RVL++DGGG++R A++       A +NGW GI+V G +R + ++   DIG+ ALA  P+ A+K+ IGE  VP+  GG      +++YAD  GI++S+  L +
Sbjct:   38 TVKCFENNGLITDILEENGEGRVLLIDGGGAVRRALVDAELAQLAVDNGWEGIIVYGAVRQIQQLEEMDIGIHALAPIPVGADKQNIGEIDVPVNFGGVTFFPEDYVYADLTGIILSQEPLEL 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_HAEIN (Regulator of ribonuclease activity A OS=Haemophilus influenzae GN=rraA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.543e-22
Identity = 49/123 (39.84%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N LI E LEE G  RVLV+DGGG++R  ++       A +NGW GI+V G +R + ++   DIG+ ALA  P+ A++   GE  +P+  GG      +++YAD  GI++S+  L +
Sbjct:   38 TVKCFESNGLIAEVLEENGEGRVLVIDGGGAVRRGLIDAELAQLAVDNGWEGIIVYGAVRQIQQLENLDIGIHALAPIPVSADESSAGESDIPVNFGGVTFFPEDYIYADLTGIILSQEPLDL 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_HAEIG (Regulator of ribonuclease activity A OS=Haemophilus influenzae (strain PittGG) GN=rraA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.543e-22
Identity = 49/123 (39.84%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N LI E LEE G  RVLV+DGGG++R  ++       A +NGW GI+V G +R + ++   DIG+ ALA  P+ A++   GE  +P+  GG      +++YAD  GI++S+  L +
Sbjct:   38 TVKCFESNGLIAEVLEENGEGRVLVIDGGGAVRRGLIDAELAQLAVDNGWEGIIVYGAVRQIQQLENLDIGIHALAPIPVSADESSAGESDIPVNFGGVTFFPEDYIYADLTGIILSQEPLDL 160          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_HAEIE (Regulator of ribonuclease activity A OS=Haemophilus influenzae (strain PittEE) GN=rraA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.543e-22
Identity = 49/123 (39.84%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+K F+ N LI E LEE G  RVLV+DGGG++R  ++       A +NGW GI+V G +R + ++   DIG+ ALA  P+ A++   GE  +P+  GG      +++YAD  GI++S+  L +
Sbjct:   38 TVKCFESNGLIAEVLEENGEGRVLVIDGGGAVRRGLIDAELAQLAVDNGWEGIIVYGAVRQIQQLENLDIGIHALAPIPVSADESSAGESDIPVNFGGVTFFPEDYIYADLTGIILSQEPLDL 160          
The following BLAST results are available for this feature:
BLAST of DY256911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
RRAA_MYCSK1.520e-2240.52Regulator of ribonuclease activity A OS=Mycobacter... [more]
RRAA_HAES21.520e-2241.46Regulator of ribonuclease activity A OS=Haemophilu... [more]
RRAA_HAES11.985e-2241.46Regulator of ribonuclease activity A OS=Haemophilu... [more]
RRAA_YERE84.422e-2244.72Regulator of ribonuclease activity A OS=Yersinia e... [more]
RRAA_SERP55.775e-2243.09Regulator of ribonuclease activity A OS=Serratia p... [more]
RRAA_XANAC7.543e-2239.84Regulator of ribonuclease activity A OS=Xanthomona... [more]
RRAA_PASMU7.543e-2241.46Regulator of ribonuclease activity A OS=Pasteurell... [more]
RRAA_HAEIN7.543e-2239.84Regulator of ribonuclease activity A OS=Haemophilu... [more]
RRAA_HAEIG7.543e-2239.84Regulator of ribonuclease activity A OS=Haemophilu... [more]
RRAA_HAEIE7.543e-2239.84Regulator of ribonuclease activity A OS=Haemophilu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DF03ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256911 ID=DY256911; Name=DY256911; organism=Citrus clementina; type=EST; length=1120bp
ACCCTCAAGGTATTTCAATTTAATGTTTTGATTCGTGAGTTTCTTGAGGA
GAAGGGTAATTTAAGAGTTCTTGTTGTAGATGGGGGTGGGAGTTTGCGGT
GCGCTATATTGGGGGGTAACCCTGTCGTACAAGCCCACAATAACGGATGG
GCTGGAATAGTTGTGAATGGGTGTATTAGGGATGTTGATGAAATTAATGG
GTGTGATATTGGTGTGAGAGCACTGGCTTCTCGTCCCATGAAAGCCAATA
AGAAGGGGATTGGGGAGAAACATGTGCCAATAACTATTGGTGGGACAAGA
ATCAGTGATGGCGAATGGCTTTATGCTGACACAGATGGCATCTTGATTTC
TCGGGCAGAGTTATCTGTATGAGTCCTTTCCTTTGCAAATACCAAAACTG
CAGGTGCTTTTCCTGGAATGTATTCCCCTACTATTATGCCTAACTTGTTT
TCCCGAGCCCATTTATTAATTTTAGATGAACTTGTGTGGTGTGTCAAAAA
TCTATCCGACTTCGTTTTGATCTGTTTGTTTATTGCACATCAAATTGGAA
TGTTGTTTCTGGTGATGATGATAATAATGATTCCGATAAGAATAAATTAT
TATTGCTCTTTTGGCCTTTTGAGGGTAGACTCATGAAGTCCTTTGAAAAA
GTAAACCAGTTAAAAAAAAAACAAAAAAGCCAAAACAATTTCCAATCTCC
TACCCAATCTCCACAAAAATTAAACCCTTGGGGCCCCCCCCCGCCCAATT
TAAACTCAAAACCCAGAAAATTTATCCCTTCGGGCCCCATTTCCAACTCC
CTTTACCAATTTCCCCTATATGGGTTTCTATTAAAATTCAGGGCCCCCCT
TTTTAACACCTCGGGTTGGGAAAACCCCGGGCTTTCCCCCATTAACCCCC
TTTGCCCCCCCTCCCCCTTTCCCCCGCGGGGGTAAAAAAGAAAAAGCCCC
CCCCCCTTTCCCCCTTCCAAAAAATTTGCCCCCCCCGGGAATGGGAAAAG
GAAAAATGTGAACCCTTAAAAAATTTTTTAAAAAAATTCCCCCCTTAATT
TTTTTTTTAACACCCCCTTCCTTTTTTTTAACCCCAAAAGGCGCCAAAAA
TCGCGAAAAAAACCCCTTTA
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