DY256913

Overview
NameDY256913
Unique NameDY256913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig162 contig Ccv1_Contig162:44..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256913 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 293.508 bits (750), Expect = 7.878e-79
Identity = 139/178 (78.09%), Postives = 160/178 (89.89%), Query Frame = 2
Query:    2 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEPHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 535
            GL  +KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD+IR LWRHY++NT+G+IFVVDSNDR R+ EAR+   RMLNEDELR+A  LVFANKQDLP AM+AAEIT+KLGLHS+R R W+IQ+TCATSGEGLYEGL+WLSN++ N
Sbjct:    2 GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKN 179          
BLAST of DY256913 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFA (ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=2 SV=3)

HSP 1 Score: 293.508 bits (750), Expect = 7.878e-79
Identity = 134/178 (75.28%), Postives = 166/178 (93.26%), Query Frame = 2
Query:    2 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEPHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 535
            GL  ++LF+RLF KK++RILMVGLDAAGKTTILYK+KLGE+VTTIPTIGFNVETVE++NISFTVWDVGGQDKIRPLWRHY+ NT GLIFVVDSNDR+R+ +AR+E HRM+NE+EL+DA++LVFANKQDLPNAM+AAE+T+KL L+++R+R+W+IQSTCAT G+GLYEG DWL+ ++ N
Sbjct:    2 GLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNN 179          
BLAST of DY256913 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 5.106e-78
Identity = 133/178 (74.72%), Postives = 165/178 (92.70%), Query Frame = 2
Query:    2 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEPHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 535
            GL  ++LF+RLF KK++RILMVGLDAAGKTTILYK+KLGE+VTTIPTIGFNVETVE++NISFTVWDVGGQDKIRPLWRHY+ NT GLIFVVDSNDR+R+ +AR+  HRM+NE+EL+DA++LVFANKQDLPNAM+AAE+T+KL L+++R+R+W+IQSTCAT G+GLYEG DWL+ ++ N
Sbjct:    2 GLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNN 179          
BLAST of DY256913 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 267.314 bits (682), Expect = 6.046e-71
Identity = 126/181 (69.61%), Postives = 154/181 (85.08%), Query Frame = 2
Query:    2 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD--RVVEARDEPHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 538
            G   +K+F +LF+KKE+RILMVGLDAAGKTTILYKL LGE+VTT+PTIGFNVETVEYKNI+FTVWDVGGQD IRPLWRHY+QNT  LI+V+DS D +  R+ +A++E H +L EDELRDA LLVFANKQDLP AM+  ++T++LGL  L++R WYIQ TCA SG+GLY+GLDWLS+ I +K
Sbjct:    2 GQGASKIFGKLFSKKEVRILMVGLDAAGKTTILYKLMLGEVVTTVPTIGFNVETVEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGLQELKKRDWYIQPTCARSGDGLYQGLDWLSDYIFDK 182          
BLAST of DY256913 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 6.684e-70
Identity = 121/170 (71.18%), Postives = 146/170 (85.88%), Query Frame = 2
Query:   17 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEPHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 526
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR E HR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          
BLAST of DY256913 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.684e-70
Identity = 121/170 (71.18%), Postives = 146/170 (85.88%), Query Frame = 2
Query:   17 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEPHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 526
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR E HR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          
BLAST of DY256913 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 6.684e-70
Identity = 121/170 (71.18%), Postives = 146/170 (85.88%), Query Frame = 2
Query:   17 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEPHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 526
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR E HR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          
BLAST of DY256913 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 6.684e-70
Identity = 121/170 (71.18%), Postives = 146/170 (85.88%), Query Frame = 2
Query:   17 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEPHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 526
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR E HR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          
BLAST of DY256913 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 1.140e-69
Identity = 121/170 (71.18%), Postives = 145/170 (85.29%), Query Frame = 2
Query:   17 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEPHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 526
            K+FS++F  KEMRILM GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR E HR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CA SG+GLYEGL WL++N
Sbjct:    3 KMFSKIFGNKEMRILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAASGDGLYEGLTWLTSN 172          
BLAST of DY256913 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 262.692 bits (670), Expect = 1.489e-69
Identity = 120/170 (70.59%), Postives = 146/170 (85.88%), Query Frame = 2
Query:   17 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEPHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 526
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR E HR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CAT+G+GLYEGL WL++N
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSN 172          
The following BLAST results are available for this feature:
BLAST of DY256913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF1_YEAST7.878e-7978.09ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF1_PLAFA7.878e-7975.28ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF1_PLAFO5.106e-7874.72ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF_GIALA6.046e-7169.61ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF6_RAT6.684e-7071.18ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG6.684e-7071.18ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE6.684e-7071.18ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN6.684e-7071.18ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_XENLA1.140e-6971.18ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF6_CHICK1.489e-6970.59ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DF07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256913 ID=DY256913; Name=DY256913; organism=Citrus clementina; type=EST; length=736bp
GGGGCTGTCATTTACGAAACTTTTTAGCCGGCTTTTTGCCAAGAAAGAGA
TGCGAATTCTGATGGTGGGTCTCGACGCTGCTGGTAAGACCACCATTTTG
TACAAGCTCAAGCTCGGTGAGATTGTGACAACCATTCCTACCATTGGTTT
CAACGTGGAGACTGTGGAATATAAGAACATTAGCTTCACTGTTTGGGATG
TTGGGGGTCAGGATAAGATTCGTCCTTTGTGGAGGCATTACTTCCAAAAC
ACTCAAGGACTTATCTTTGTGGTTGATAGCAATGATCGTGACCGTGTGGT
TGAAGCTAGAGATGAACCGCACCGGATGCTGAATGAGGATGAGTTGAGGG
ATGCTGTGCTGCTTGTTTTTGCCAACAAGCAAGATCTTCCAAATGCCATG
AATGCTGCAGAGATCACTGATAAGCTTGGTCTTCACTCACTTCGCCAACG
CCACTGGTACATCCAGAGCACATGTGCAACATCTGGGGAAGGACTCTATG
AGGGTCTGGACTGGCTCTCCAACAACATCGCTAACAAGGCTTAAGTGACT
GGTCAAGTCTGAGCGACTCTTTGCGGCAGCATCTATGTGAATGATGTTAC
TATGCTTTTGTTTATTTTGTCGGGGATTCTTTTTGGGCTTTACTACCTAC
GTTCAGTAGAATGTATTTGTTTGTGTTAGATATTTGATTGGCACCATACT
ATAAAGTTTTCTGCATTGTCATTGTAGAGTTTAAAG
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