DY256946

Overview
NameDY256946
Unique NameDY256946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_XYLFT (Fumarate hydratase class II OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=fumC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVP 326
            V G +G+F+LNV  P+IA  LL S  LLG+         + G++  ++R+ ++L  + +LVT+LNP IGY+ AA +AK+A+KE   + + A +   LN  E   L+ P
Sbjct:  350 VAGQSGNFQLNVTLPLIAYNLLESATLLGNVVMLLADKVIVGLKVRQDRVQEVLERNPILVTALNPIIGYEKAAVIAKRAYKEHRPVLEVACEESNLNPVELARLLDP 457          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_XYLFA (Fumarate hydratase class II OS=Xylella fastidiosa GN=fumC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVP 326
            V G +G+F+LNV  P+IA  LL S  LLG+         + G++  ++R+ ++L  + +LVT+LNP IGY+ AA +AK+A+KE   + + A +   LN  E   L+ P
Sbjct:  350 VAGQSGNFQLNVTLPLIAYNLLESATLLGNVVMLLADKVIVGLKVRQDRVQEVLERNPILVTALNPIIGYEKAAVIAKRAYKEHRPVLEVACEESNLNPVELARLLDP 457          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_STRAW (Fumarate hydratase class II OS=Streptomyces avermitilis GN=fumC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 3
Query:    9 GSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLN 296
            G+ G+FELNV  P+IA  +L S+RLL   S       V GI A+R+R  +    S  +VT LN  IGY+ AA VAKKA  E  T++   L+ G ++
Sbjct:  351 GAAGNFELNVMLPVIAKNVLESVRLLAHVSRLLADRTVDGIVAHRDRAREYAESSPSVVTPLNKYIGYEEAAKVAKKALAERQTIRQVVLESGYVD 446          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: ASPA_HAEIN (Aspartate ammonia-lyase OS=Haemophilus influenzae GN=aspA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 34/110 (30.91%), Postives = 60/110 (54.55%), Query Frame = 3
Query:   18 GHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 347
            G  +LNV +P+I   +  S+ +L +A  +    CV GI  N+E     +  S+ +VT LNP IG+ N   V K   + G  +++  L+ G+L  E+ D+++  E ++ P+
Sbjct:  359 GQLQLNVMEPVIGQAMFESIDILTNACVNLRDKCVDGITVNKEICENYVFNSIGIVTYLNPFIGHHNGDLVGKICAQTGKGVREVVLEKGLLTEEQLDDILSVENLMNPT 468          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: ASPA_SERMA (Aspartate ammonia-lyase OS=Serratia marcescens GN=aspA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 34/110 (30.91%), Postives = 61/110 (55.45%), Query Frame = 3
Query:   18 GHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 347
            G  +LNV +P+I   +  S+ +L +A  +  + C+ GI AN+E     +  S+ +VT LNP IG+ N   V K   + G ++++  L+ G+L   E D++   E ++ P+
Sbjct:  357 GQLQLNVMEPVIGQAMFESIHILTNACYNLLEKCINGITANKEVCEHYVFNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVENLMHPA 466          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: ASPA_SHIFL (Aspartate ammonia-lyase OS=Shigella flexneri GN=aspA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.067e-11
Identity = 33/110 (30.00%), Postives = 62/110 (56.36%), Query Frame = 3
Query:   18 GHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 347
            G  +LNV +P+I   +  S+ +L +A  +  + C+ GI AN+E     ++ S+ +VT LNP IG+ N   V K   + G ++++  L+ G+L   E D++   + ++ P+
Sbjct:  357 GQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPA 466          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: ASPA_ECOLI (Aspartate ammonia-lyase OS=Escherichia coli (strain K12) GN=aspA PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.067e-11
Identity = 33/110 (30.00%), Postives = 62/110 (56.36%), Query Frame = 3
Query:   18 GHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 347
            G  +LNV +P+I   +  S+ +L +A  +  + C+ GI AN+E     ++ S+ +VT LNP IG+ N   V K   + G ++++  L+ G+L   E D++   + ++ P+
Sbjct:  357 GQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPA 466          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: ASPA_ECOL6 (Aspartate ammonia-lyase OS=Escherichia coli O6 GN=aspA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.067e-11
Identity = 33/110 (30.00%), Postives = 62/110 (56.36%), Query Frame = 3
Query:   18 GHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 347
            G  +LNV +P+I   +  S+ +L +A  +  + C+ GI AN+E     ++ S+ +VT LNP IG+ N   V K   + G ++++  L+ G+L   E D++   + ++ P+
Sbjct:  357 GQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPA 466          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: ASPA_ECO57 (Aspartate ammonia-lyase OS=Escherichia coli O157:H7 GN=aspA PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.067e-11
Identity = 33/110 (30.00%), Postives = 62/110 (56.36%), Query Frame = 3
Query:   18 GHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 347
            G  +LNV +P+I   +  S+ +L +A  +  + C+ GI AN+E     ++ S+ +VT LNP IG+ N   V K   + G ++++  L+ G+L   E D++   + ++ P+
Sbjct:  357 GQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPA 466          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_STRCO (Fumarate hydratase class II OS=Streptomyces coelicolor GN=fumC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.700e-11
Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = 3
Query:    9 GSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAAL-----KLGVLNSEEFDNLVVPEKMIGP 344
            G+ G+FELNV  P+IA  +L S+RLL + S       V GI A+ ER  +    S  +VT LN  +GY+ AA VAK+A  E  T++   L     + G L  E+ D  +   +M  P
Sbjct:  345 GAAGNFELNVMLPVIAKNVLESVRLLANVSRLLADRTVDGIVAHPERAREYAESSPSVVTPLNKYLGYEEAAKVAKRALAERKTIRQTVLEGGYVERGDLTREQLDQALDVLRMTRP 461          
The following BLAST results are available for this feature:
BLAST of DY256946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_XYLFT4.451e-1437.96Fumarate hydratase class II OS=Xylella fastidiosa ... [more]
FUMC_XYLFA4.451e-1437.96Fumarate hydratase class II OS=Xylella fastidiosa ... [more]
FUMC_STRAW3.189e-1242.71Fumarate hydratase class II OS=Streptomyces avermi... [more]
ASPA_HAEIN9.280e-1230.91Aspartate ammonia-lyase OS=Haemophilus influenzae ... [more]
ASPA_SERMA1.212e-1130.91Aspartate ammonia-lyase OS=Serratia marcescens GN=... [more]
ASPA_SHIFL2.067e-1130.00Aspartate ammonia-lyase OS=Shigella flexneri GN=as... [more]
ASPA_ECOLI2.067e-1130.00Aspartate ammonia-lyase OS=Escherichia coli (strai... [more]
ASPA_ECOL62.067e-1130.00Aspartate ammonia-lyase OS=Escherichia coli O6 GN=... [more]
ASPA_ECO572.067e-1130.00Aspartate ammonia-lyase OS=Escherichia coli O157:H... [more]
FUMC_STRCO2.700e-1137.61Fumarate hydratase class II OS=Streptomyces coelic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3AD06ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256946 ID=DY256946; Name=DY256946; organism=Citrus clementina; type=EST; length=788bp
CAGTGGGTGGATCAAATGGCCATTTTGAACTAAATGTATTCAAGCCAATG
ATTGCTAGTGGTCTCCTACATTCACTGAGATTGCTGGGAGATGCATCTGC
TTCTTTTGAGAAGAACTGTGTGAGAGGAATTCAAGCTAATAGGGAAAGGA
TTTCCAAATTGCTGCACGAGTCATTGATGCTTGTCACATCCTTGAATCCT
AAAATTGGTTATGACAATGCTGCGGCAGTTGCCAAGAAGGCTCACAAGGA
GGGAACTACACTTAAGGATGCTGCATTGAAACTCGGAGTACTCAATAGTG
AAGAATTTGATAATCTTGTGGTACCTGAGAAAATGATTGGCCCATCCGAC
TAACCAGCTTATGTGGGTTAAACTCCTGGGATTTGCTTTTGGCTTTTGTA
TCATTTTGCGGGATATCTGTTTCTGCGCCGTTTCTCTCCCTCAAGGCCTC
AACTGAATCACTTGATAGGGATCCAAATAGTGATTTTGCTTTTATTTTAA
AAAAACAAAGAAAGGGGCACCAAAAAAAAAACTATATTCTTTGAGGTTTT
CCCAGGAGGAGGCTTCATTGATATGTCATTTCACGTGGTTGACAAATAAC
CGATTGGTAAGCCAAACAAGGGGAAAACCTCCCTCATTTTTTTGGGCCGA
CATGGGAATAAAAAAATGGTTAAAACCAAAAAAAAATGAAAAAAAATTTT
AAAGGCTAAAGGGACCCTTAAAATGAACCCCCCCAAATTTTTTTTTAATT
GAAAAAAATTTTTTTCAAAAAAAACATTATTTTGGAAG
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