DY256946

Overview
NameDY256946
Unique NameDY256946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_ECOL6 (Fumarate hydratase class II OS=Escherichia coli O6 GN=fumC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.281e-33
Identity = 70/113 (61.95%), Postives = 87/113 (76.99%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 341
            +GG++G+FELNVF+PM+    L S+RLL D   SF K+C  GI+ NRERI++LL+ESLMLVT+LN  IGYD AA +AKKAHKEG TLK AAL LG L+  EFD  V PE+M+G
Sbjct:  349 MGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDRWVRPEQMVG 461          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_RICFE (Fumarate hydratase class II OS=Rickettsia felis GN=fumC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.591e-33
Identity = 69/113 (61.06%), Postives = 87/113 (76.99%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 341
            + GSNGH ELNVFKP+I   +L S+ LL D+  SF  +CV+G++ N  RI+ L  +SLMLVT+LNP IGYDNAA +AK+AHK G TLK+AA KL +L+ EEFD +VVPEKMIG
Sbjct:  349 IAGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINDLRDKSLMLVTALNPHIGYDNAAKIAKEAHKHGITLKEAAKKLNLLSEEEFDKIVVPEKMIG 461          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_PHOLL (Fumarate hydratase class II OS=Photorhabdus luminescens subsp. laumondii GN=fumC PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.537e-33
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 341
            +GG++G+FELNVF+PM+ +  L S+RLL D   SF ++C  GI+ NR+RI++LL+ESLMLVT+LN  IGYD AA +AKKAHKEG TLK +A+KLG L   EFD  V PE M+G
Sbjct:  349 IGGASGNFELNVFRPMVINNFLQSVRLLADGMRSFNEHCAVGIEPNRDRITQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKQSAMKLGYLTEAEFDEWVRPEDMVG 461          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_HELPY (Fumarate hydratase class II OS=Helicobacter pylori GN=fumC PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.537e-33
Identity = 67/114 (58.77%), Postives = 87/114 (76.32%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 344
            +  S G+FELNVFKP+I    L SLRLL D+  SF  +C  GI+ NRE+I   LH SLMLVT+LNP +GY+NAA +AK AHK+G +LK++AL+L +L++E+FD  VVPEKMIGP
Sbjct:  348 IAASQGNFELNVFKPVIIYNFLQSLRLLSDSMESFNIHCASGIEPNREKIDYYLHHSLMLVTALNPHVGYENAAKIAKNAHKKGISLKESALELKLLSAEDFDKFVVPEKMIGP 461          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_HELPJ (Fumarate hydratase class II OS=Helicobacter pylori J99 GN=fumC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.125e-32
Identity = 66/114 (57.89%), Postives = 87/114 (76.32%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 344
            +  S G+FELNVFKP+I    L SLRLL D+  SF  +C  GI+ N+E+I   LH SLMLVT+LNP +GY+NAA +AK AHK+G +LK++AL+L +L++E+FD  VVPEKMIGP
Sbjct:  348 IAASQGNFELNVFKPVIIYNFLQSLRLLSDSMESFNIHCASGIEPNKEKIDYYLHHSLMLVTALNPHVGYENAAKIAKNAHKKGISLKESALELKLLSAEDFDQFVVPEKMIGP 461          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_SALTY (Fumarate hydratase class II OS=Salmonella typhimurium GN=fumC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.733e-32
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 341
            +GG++G+FELNV++PM+    L ++RLL D   SF K+C  GI+ NRERI++LL+ESLMLVT+LN  IGYD AA +AKKAHKEG TLK +A+ LG L+ EEFD  V PE M+G
Sbjct:  349 MGGASGNFELNVYRPMVIHNFLQTVRLLADGMESFNKHCASGIEPNRERITQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKASAVALGYLSDEEFDAWVRPELMVG 461          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_RICBR (Fumarate hydratase class II OS=Rickettsia bellii (strain RML369-C) GN=fumC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.377e-31
Identity = 68/115 (59.13%), Postives = 86/115 (74.78%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 347
            + GSNGH ELNVFKP+I   +L S+ LL DA+ SF  +CV GI+ N   I+ L  +SLMLVT+LNP IGYDNAA +AK+AHK G TLK+AA KL +L+ EEF+ +VVPEKM+  S
Sbjct:  349 IAGSNGHLELNVFKPVIIYNILQSIELLSDAANSFVTHCVDGIEPNITHINDLRDKSLMLVTALNPHIGYDNAAKIAKEAHKHGITLKEAAKKLNLLSEEEFNKIVVPEKMVRQS 463          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_SALTI (Fumarate hydratase class II OS=Salmonella typhi GN=fumC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.799e-31
Identity = 66/113 (58.41%), Postives = 87/113 (76.99%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 341
            +GG++G+FELNV++PM+    L ++RLL D  ASF ++C  GI+ NRERI++LL+ESLMLVT+LN  IGYD AA +AKKAHKEG TLK +A+ LG L+  EFD  V PE M+G
Sbjct:  349 MGGASGNFELNVYRPMVIHNFLQTVRLLADGMASFNQHCASGIEPNRERITQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKASAVALGYLSDAEFDAWVRPELMVG 461          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_RICPR (Fumarate hydratase class II OS=Rickettsia prowazekii GN=fumC PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.799e-31
Identity = 68/112 (60.71%), Postives = 84/112 (75.00%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 338
            + GSNGH ELNVFKP+I   +L S+ LL D+  SF  +CV+G++ N  RI+ L  +SLMLVT LNP IGYDNAA +AK+AHK G TLK+AA KL  L+ EEFD +VVPEKMI
Sbjct:  349 IAGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHIGYDNAAKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMI 460          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_RICTY (Fumarate hydratase class II OS=Rickettsia typhi GN=fumC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.349e-31
Identity = 67/112 (59.82%), Postives = 85/112 (75.89%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 338
            + GSNGH ELNVFKP+I   +L S+ LL D+  SF  +CV+G++ N ERI+ L  +SLMLVT LNP IGYDNAA +AK+A+K G TLK+AA KL  L+ EEFD +V+PEKMI
Sbjct:  349 IAGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIERINALRDKSLMLVTVLNPHIGYDNAAKIAKEAYKYGITLKEAAKKLNFLSEEEFDKIVIPEKMI 460          
The following BLAST results are available for this feature:
BLAST of DY256946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_ECOL64.281e-3361.95Fumarate hydratase class II OS=Escherichia coli O6... [more]
FUMC_RICFE5.591e-3361.06Fumarate hydratase class II OS=Rickettsia felis GN... [more]
FUMC_PHOLL9.537e-3359.29Fumarate hydratase class II OS=Photorhabdus lumine... [more]
FUMC_HELPY9.537e-3358.77Fumarate hydratase class II OS=Helicobacter pylori... [more]
FUMC_HELPJ2.125e-3257.89Fumarate hydratase class II OS=Helicobacter pylori... [more]
FUMC_SALTY4.733e-3259.29Fumarate hydratase class II OS=Salmonella typhimur... [more]
FUMC_RICBR1.377e-3159.13Fumarate hydratase class II OS=Rickettsia bellii (... [more]
FUMC_SALTI1.799e-3158.41Fumarate hydratase class II OS=Salmonella typhi GN... [more]
FUMC_RICPR1.799e-3160.71Fumarate hydratase class II OS=Rickettsia prowazek... [more]
FUMC_RICTY2.349e-3159.82Fumarate hydratase class II OS=Rickettsia typhi GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3AD06ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256946 ID=DY256946; Name=DY256946; organism=Citrus clementina; type=EST; length=788bp
CAGTGGGTGGATCAAATGGCCATTTTGAACTAAATGTATTCAAGCCAATG
ATTGCTAGTGGTCTCCTACATTCACTGAGATTGCTGGGAGATGCATCTGC
TTCTTTTGAGAAGAACTGTGTGAGAGGAATTCAAGCTAATAGGGAAAGGA
TTTCCAAATTGCTGCACGAGTCATTGATGCTTGTCACATCCTTGAATCCT
AAAATTGGTTATGACAATGCTGCGGCAGTTGCCAAGAAGGCTCACAAGGA
GGGAACTACACTTAAGGATGCTGCATTGAAACTCGGAGTACTCAATAGTG
AAGAATTTGATAATCTTGTGGTACCTGAGAAAATGATTGGCCCATCCGAC
TAACCAGCTTATGTGGGTTAAACTCCTGGGATTTGCTTTTGGCTTTTGTA
TCATTTTGCGGGATATCTGTTTCTGCGCCGTTTCTCTCCCTCAAGGCCTC
AACTGAATCACTTGATAGGGATCCAAATAGTGATTTTGCTTTTATTTTAA
AAAAACAAAGAAAGGGGCACCAAAAAAAAAACTATATTCTTTGAGGTTTT
CCCAGGAGGAGGCTTCATTGATATGTCATTTCACGTGGTTGACAAATAAC
CGATTGGTAAGCCAAACAAGGGGAAAACCTCCCTCATTTTTTTGGGCCGA
CATGGGAATAAAAAAATGGTTAAAACCAAAAAAAAATGAAAAAAAATTTT
AAAGGCTAAAGGGACCCTTAAAATGAACCCCCCCAAATTTTTTTTTAATT
GAAAAAAATTTTTTTCAAAAAAAACATTATTTTGGAAG
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